#------------------------------------------------------------------------------ #$Date: 2013-12-28 14:58:47 +0100 (Sat, 28 Dec 2013) $ #$Revision: 91933 $ #$URL: svn://www.crystallography.net/cod/cif/2/10/05/2100555.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2100555 loop_ _publ_author_name 'C. D. Antoniadis' 'A. J. Blake' 'S. K. Hadjikakou' 'N. Hadjiliadis' 'P. Hubberstey' 'M. Schr\"oder' 'C. Wilson' _publ_section_title ; Structural characterization of selenium and selenium-diiodine analogues of the antithyroid drug 6-n-propyl-2-thiouracil and its alkyl derivatives ; _journal_coeditor_code SO5003 _journal_date_accepted 2006-03-29 _journal_date_recd_electronic 2006-03-08 _journal_issue 4 _journal_name_full 'Acta Crystallographica Section B' _journal_page_first 580 _journal_page_last 591 _journal_paper_category FA _journal_volume 62 _journal_year 2006 _chemical_formula_moiety 'C7 H10 N2 O Se' _chemical_formula_sum 'C7 H10 N2 O Se' _chemical_formula_weight 217.13 _chemical_name_systematic ; ? ; _space_group_IT_number 2 _symmetry_cell_setting triclinic _symmetry_space_group_name_Hall '-P 1' _symmetry_space_group_name_H-M 'P -1' _atom_sites_solution_hydrogens 'geometrically placed, NH from delta-F and then idealised' _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_creation_method 'enCIFer editing of SHELXL97 CIF output' _cell_angle_alpha 106.019(2) _cell_angle_beta 105.366(2) _cell_angle_gamma 96.166(2) _cell_formula_units_Z 6 _cell_length_a 8.9192(9) _cell_length_b 10.6403(10) _cell_length_c 15.1965(15) _cell_measurement_reflns_used 3689 _cell_measurement_temperature 150(2) _cell_measurement_theta_max 27.55 _cell_measurement_theta_min 2.4 _cell_volume 1311.0(2) _computing_cell_refinement 'Bruker SAINT version 6.36a (Bruker, 2000)' _computing_data_collection 'Bruker SMART version 5.625 (Bruker, 2001)' _computing_data_reduction 'Bruker SAINT; Bruker SHELXTL (Bruker, 2001)' _computing_molecular_graphics 'PLATON (Spek, 2003)' _computing_publication_material 'enCIFer (Allen et al., 2004); PLATON' _computing_structure_refinement 'SHELXL97 (Sheldrick, 1997)' _computing_structure_solution 'SHELXS97 (Sheldrick, 1990)' _diffrn_ambient_temperature 150(2) _diffrn_measured_fraction_theta_full 0.957 _diffrn_measured_fraction_theta_max 0.953 _diffrn_measurement_device_type 'Bruker SMART APEX CCD area detector' _diffrn_measurement_method \w _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.013 _diffrn_reflns_av_sigmaI/netI 0.031 _diffrn_reflns_limit_h_max 7 _diffrn_reflns_limit_h_min -11 _diffrn_reflns_limit_k_max 13 _diffrn_reflns_limit_k_min -13 _diffrn_reflns_limit_l_max 19 _diffrn_reflns_limit_l_min -17 _diffrn_reflns_number 8163 _diffrn_reflns_theta_full 27.50 _diffrn_reflns_theta_max 27.58 _diffrn_reflns_theta_min 2.41 _diffrn_standards_decay_% 0 _diffrn_standards_number 0 _exptl_absorpt_coefficient_mu 4.242 _exptl_absorpt_correction_T_max 0.770 _exptl_absorpt_correction_T_min 0.581 _exptl_absorpt_correction_type multi-scan _exptl_absorpt_process_details 'Bruker SADABS v2.03' _exptl_crystal_colour colourless _exptl_crystal_density_diffrn 1.650 _exptl_crystal_density_method 'not measured' _exptl_crystal_description tablet _exptl_crystal_F_000 648 _exptl_crystal_size_max 0.25 _exptl_crystal_size_mid 0.14 _exptl_crystal_size_min 0.06 _refine_diff_density_max 0.65 _refine_diff_density_min -0.40 _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 1.04 _refine_ls_hydrogen_treatment constr _refine_ls_matrix_type full _refine_ls_number_parameters 298 _refine_ls_number_reflns 5780 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 1.04 _refine_ls_R_factor_all 0.0355 _refine_ls_R_factor_gt 0.0280 _refine_ls_shift/su_max 0.001 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w=1/[\s^2^(Fo^2^)+(0.033P)^2^+0.854P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.0674 _refine_ls_wR_factor_ref 0.0710 _reflns_number_gt 4932 _reflns_number_total 5780 _reflns_threshold_expression >2\s(I) _[local]_cod_data_source_file so5003.cif _[local]_cod_data_source_block 4 _cod_depositor_comments ; The following automatic conversions were performed: '_symmetry_cell_setting' value 'Triclinic' changed to 'triclinic' according to '/home/saulius/struct/CIF-dictionaries/cif_core.dic' dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. Automatic conversion script Id: cif_fix_enum 1527 2010-12-29 10:47:43Z saulius The following automatic conversions were performed: '_symmetry_cell_setting' value 'Triclinic' changed to 'triclinic' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. Automatic conversion script Id: cif_fix_values 1715 2011-07-08 13:25:40Z adriana ; _cod_database_code 2100555 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, -y, -z' loop_ _atom_site_type_symbol _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy Se Se1 1.07398(3) 0.80241(2) 0.489662(16) 0.02136(7) Uani d . 1 O O1 0.9476(2) 0.59638(17) 0.12915(12) 0.0285(4) Uani d . 1 N N1 0.9208(2) 0.89862(18) 0.34418(13) 0.0183(4) Uani d . 1 H H1A 0.9156 0.9646 0.3925 0.022 Uiso calc R 1 C C2 0.9924(3) 0.8001(2) 0.36425(16) 0.0176(4) Uani d . 1 N N3 0.9998(2) 0.70197(19) 0.28899(14) 0.0196(4) Uani d . 1 H H3A 1.0503 0.6392 0.3014 0.024 Uiso calc R 1 C C4 0.9335(3) 0.6915(2) 0.19217(17) 0.0219(5) Uani d . 1 C C5 0.8561(3) 0.7987(2) 0.17681(17) 0.0226(5) Uani d . 1 H H5A 0.8050 0.7969 0.1130 0.027 Uiso calc R 1 C C6 0.8549(3) 0.9013(2) 0.25115(17) 0.0193(5) Uani d . 1 C C7 0.7970(3) 1.0269(2) 0.24404(17) 0.0218(5) Uani d . 1 H H7A 0.7532 1.0597 0.2985 0.026 Uiso calc R 1 C C8 0.6658(3) 1.0049(3) 0.15028(19) 0.0305(6) Uani d . 1 H H8A 0.5767 0.9373 0.1444 0.046 Uiso calc R 1 H H8B 0.7066 0.9745 0.0958 0.046 Uiso calc R 1 H H8C 0.6298 1.0888 0.1504 0.046 Uiso calc R 1 C C9 0.9385(3) 1.1326(2) 0.2569(2) 0.0304(6) Uani d . 1 H H9A 1.0200 1.1450 0.3180 0.046 Uiso calc R 1 H H9B 0.9038 1.2170 0.2574 0.046 Uiso calc R 1 H H9C 0.9824 1.1034 0.2036 0.046 Uiso calc R 1 Se Se1A 0.69491(3) 0.71890(3) -0.093473(18) 0.03059(8) Uani d . 1 O O1A 0.4581(3) 0.25574(19) -0.32509(13) 0.0393(5) Uani d . 1 N N1A 0.7470(2) 0.4752(2) -0.06506(14) 0.0236(4) Uani d . 1 H H1AA 0.8105 0.5243 -0.0079 0.028 Uiso calc R 1 C C2A 0.6681(3) 0.5381(2) -0.12369(17) 0.0238(5) Uani d . 1 N N3A 0.5675(3) 0.4566(2) -0.20863(15) 0.0264(5) Uani d . 1 H H3AA 0.5075 0.4945 -0.2454 0.032 Uiso calc R 1 C C4A 0.5493(3) 0.3187(3) -0.24379(19) 0.0294(6) Uani d . 1 C C5A 0.6407(3) 0.2611(3) -0.17789(19) 0.0288(6) Uani d . 1 H H5AA 0.6356 0.1675 -0.1966 0.035 Uiso calc R 1 C C6A 0.7335(3) 0.3383(2) -0.08979(18) 0.0244(5) Uani d . 1 C C7A 0.8227(3) 0.2883(3) -0.01137(18) 0.0282(6) Uani d . 1 H H7AA 0.9309 0.3458 0.0194 0.034 Uiso calc R 1 C C8A 0.7373(4) 0.3039(3) 0.0660(2) 0.0383(7) Uani d . 1 H H8AA 0.7949 0.2717 0.1172 0.057 Uiso calc R 1 H H8AB 0.6290 0.2517 0.0367 0.057 Uiso calc R 1 H H8AC 0.7339 0.3981 0.0931 0.057 Uiso calc R 1 C C9A 0.8418(4) 0.1441(3) -0.0491(2) 0.0366(7) Uani d . 1 H H9AA 0.8965 0.1363 -0.0979 0.055 Uiso calc R 1 H H9AB 0.7371 0.0855 -0.0778 0.055 Uiso calc R 1 H H9AC 0.9042 0.1181 0.0042 0.055 Uiso calc R 1 Se Se1B 0.75370(3) 0.45066(2) 0.338610(18) 0.02597(7) Uani d . 1 N N1B 0.6585(2) 0.63716(19) 0.47242(14) 0.0200(4) Uani d . 1 H H1BA 0.6238 0.6691 0.4248 0.024 Uiso calc R 1 O O1B 0.8146(3) 0.48679(19) 0.68468(14) 0.0357(5) Uani d . 1 C C2B 0.7292(3) 0.5317(2) 0.45594(17) 0.0201(5) Uani d . 1 N N3B 0.7807(2) 0.4863(2) 0.53135(14) 0.0228(4) Uani d . 1 H H3BA 0.8293 0.4183 0.5221 0.027 Uiso calc R 1 C C4B 0.7638(3) 0.5376(2) 0.62238(18) 0.0243(5) Uani d . 1 C C5B 0.6852(3) 0.6498(2) 0.63353(18) 0.0225(5) Uani d . 1 H H5BA 0.6675 0.6895 0.6931 0.027 Uiso calc R 1 C C6B 0.6366(3) 0.6989(2) 0.56018(17) 0.0186(5) Uani d . 1 C C7B 0.5636(3) 0.8212(2) 0.56518(18) 0.0218(5) Uani d . 1 H H7BA 0.4642 0.7970 0.5096 0.026 Uiso calc R 1 C C8B 0.6764(3) 0.9317(2) 0.5549(2) 0.0292(6) Uani d . 1 H H8BA 0.6281 1.0106 0.5581 0.044 Uiso calc R 1 H H8BB 0.6966 0.9005 0.4929 0.044 Uiso calc R 1 H H8BC 0.7766 0.9546 0.6073 0.044 Uiso calc R 1 C C9B 0.5202(4) 0.8717(3) 0.6568(2) 0.0343(6) Uani d . 1 H H9BA 0.4477 0.8005 0.6625 0.051 Uiso calc R 1 H H9BB 0.4684 0.9480 0.6549 0.051 Uiso calc R 1 H H9BC 0.6165 0.8993 0.7123 0.051 Uiso calc R 1 loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 Se1 0.03137(14) 0.01777(11) 0.01345(11) 0.00925(9) 0.00318(9) 0.00452(9) O1 0.0422(11) 0.0256(9) 0.0151(8) 0.0135(8) 0.0060(7) 0.0025(7) N1 0.0231(10) 0.0168(9) 0.0145(9) 0.0078(8) 0.0050(8) 0.0035(7) C2 0.0208(11) 0.0162(10) 0.0140(10) 0.0028(9) 0.0038(9) 0.0037(8) N3 0.0263(11) 0.0169(9) 0.0164(9) 0.0083(8) 0.0051(8) 0.0063(8) C4 0.0256(12) 0.0211(11) 0.0166(11) 0.0024(10) 0.0047(9) 0.0049(9) C5 0.0269(13) 0.0246(11) 0.0164(11) 0.0084(10) 0.0031(9) 0.0088(9) C6 0.0177(11) 0.0228(11) 0.0181(11) 0.0052(9) 0.0033(9) 0.0093(9) C7 0.0255(12) 0.0240(11) 0.0184(12) 0.0107(10) 0.0067(10) 0.0085(9) C8 0.0265(13) 0.0338(14) 0.0315(15) 0.0098(11) 0.0013(11) 0.0166(12) C9 0.0331(14) 0.0229(12) 0.0322(14) 0.0063(11) 0.0021(11) 0.0115(11) Se1A 0.04401(17) 0.02449(13) 0.01969(13) 0.01027(11) 0.00385(11) 0.00577(10) O1A 0.0535(13) 0.0277(10) 0.0237(10) 0.0024(9) -0.0071(9) 0.0079(8) N1A 0.0264(11) 0.0260(10) 0.0146(10) 0.0054(9) 0.0017(8) 0.0046(8) C2A 0.0270(13) 0.0258(12) 0.0201(12) 0.0072(10) 0.0089(10) 0.0073(10) N3A 0.0338(12) 0.0248(10) 0.0176(10) 0.0071(9) 0.0011(9) 0.0080(8) C4A 0.0379(15) 0.0269(13) 0.0231(13) 0.0050(11) 0.0060(11) 0.0113(11) C5A 0.0360(15) 0.0224(12) 0.0253(13) 0.0052(11) 0.0040(11) 0.0087(10) C6A 0.0266(13) 0.0279(12) 0.0211(12) 0.0068(10) 0.0076(10) 0.0107(10) C7A 0.0301(14) 0.0312(13) 0.0224(13) 0.0059(11) 0.0024(10) 0.0129(11) C8A 0.0487(18) 0.0440(17) 0.0297(15) 0.0100(14) 0.0134(13) 0.0216(13) C9A 0.0392(16) 0.0345(15) 0.0380(16) 0.0135(13) 0.0064(13) 0.0175(13) Se1B 0.03340(15) 0.02453(13) 0.01974(13) 0.00943(10) 0.00871(10) 0.00476(10) N1B 0.0211(10) 0.0196(9) 0.0193(10) 0.0048(8) 0.0049(8) 0.0074(8) O1B 0.0572(13) 0.0372(10) 0.0286(10) 0.0305(10) 0.0214(9) 0.0194(9) C2B 0.0203(12) 0.0181(10) 0.0217(12) 0.0035(9) 0.0063(9) 0.0064(9) N3B 0.0294(11) 0.0209(10) 0.0228(10) 0.0139(9) 0.0105(9) 0.0087(8) C4B 0.0295(13) 0.0236(12) 0.0245(13) 0.0101(10) 0.0105(10) 0.0110(10) C5B 0.0270(13) 0.0209(11) 0.0229(12) 0.0094(10) 0.0104(10) 0.0078(10) C6B 0.0164(11) 0.0159(10) 0.0241(12) 0.0038(9) 0.0070(9) 0.0061(9) C7B 0.0200(12) 0.0170(10) 0.0278(13) 0.0067(9) 0.0049(10) 0.0072(9) C8B 0.0283(14) 0.0208(12) 0.0409(16) 0.0061(10) 0.0102(12) 0.0135(11) C9B 0.0436(17) 0.0268(13) 0.0432(17) 0.0174(12) 0.0256(14) 0.0122(12) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' Se Se -0.0929 2.2259 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle C2 N1 C6 123.3(2) N3 C2 N1 116.7(2) N3 C2 Se1 122.59(17) N1 C2 Se1 120.70(17) C2 N3 C4 125.2(2) O1 C4 N3 119.3(2) O1 C4 C5 126.0(2) N3 C4 C5 114.6(2) C6 C5 C4 121.0(2) C5 C6 N1 119.0(2) C5 C6 C7 125.6(2) N1 C6 C7 115.3(2) C6 C7 C8 112.8(2) C6 C7 C9 108.6(2) C8 C7 C9 111.5(2) C2A N1A C6A 123.9(2) N3A C2A N1A 115.0(2) N3A C2A Se1A 121.33(18) N1A C2A Se1A 123.65(18) C2A N3A C4A 126.5(2) O1A C4A N3A 120.3(2) O1A C4A C5A 125.3(2) N3A C4A C5A 114.4(2) C6A C5A C4A 120.7(2) C5A C6A N1A 119.3(2) C5A C6A C7A 125.4(2) N1A C6A C7A 115.2(2) C6A C7A C9A 112.9(2) C6A C7A C8A 109.1(2) C9A C7A C8A 110.6(2) C2B N1B C6B 123.9(2) N1B C2B N3B 115.9(2) N1B C2B Se1B 122.91(17) N3B C2B Se1B 121.19(17) C2B N3B C4B 125.9(2) O1B C4B N3B 119.7(2) O1B C4B C5B 125.8(2) N3B C4B C5B 114.5(2) C6B C5B C4B 120.6(2) C5B C6B N1B 119.2(2) C5B C6B C7B 125.5(2) N1B C6B C7B 115.4(2) C6B C7B C9B 112.8(2) C6B C7B C8B 110.0(2) C9B C7B C8B 110.1(2) C6 N1 H1A 118 C2 N1 H1A 118 C4 N3 H3A 117 C2 N3 H3A 117 C6A N1A H1AA 118 C2A N1A H1AA 118 C2A N3A H3AA 117 C4A N3A H3AA 117 C2B N1B H1BA 118 C6B N1B H1BA 118 C4B N3B H3BA 117 C2B N3B H3BA 117 C4 C5 H5A 120 C6 C5 H5A 119 C9 C7 H7A 108 C6 C7 H7A 108 C8 C7 H7A 108 H8B C8 H8C 109 C7 C8 H8A 109 H8A C8 H8C 109 C7 C8 H8C 109 H8A C8 H8B 109 C7 C8 H8B 109 H9A C9 H9B 110 C7 C9 H9C 109 H9B C9 H9C 109 C7 C9 H9B 109 H9A C9 H9C 109 C7 C9 H9A 109 C4A C5A H5AA 120 C6A C5A H5AA 120 C9A C7A H7AA 108 C8A C7A H7AA 108 C6A C7A H7AA 108 H8AA C8A H8AB 109 C7A C8A H8AB 109 C7A C8A H8AC 109 H8AB C8A H8AC 109 H8AA C8A H8AC 110 C7A C8A H8AA 109 H9AA C9A H9AB 110 H9AA C9A H9AC 109 H9AB C9A H9AC 109 C7A C9A H9AC 109 C7A C9A H9AA 109 C7A C9A H9AB 109 C4B C5B H5BA 120 C6B C5B H5BA 120 C6B C7B H7BA 108 C8B C7B H7BA 108 C9B C7B H7BA 108 C7B C8B H8BA 109 C7B C8B H8BB 109 C7B C8B H8BC 109 H8BA C8B H8BB 110 H8BA C8B H8BC 109 H8BB C8B H8BC 110 C7B C9B H9BA 109 C7B C9B H9BB 109 C7B C9B H9BC 109 H9BA C9B H9BB 109 H9BA C9B H9BC 109 H9BB C9B H9BC 109 loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance Se1 C2 1.843(2) O1 C4 1.230(3) N1 C2 1.348(3) N1 C6 1.389(3) C2 N3 1.341(3) N3 C4 1.400(3) C4 C5 1.437(3) C5 C6 1.340(3) C6 C7 1.504(3) C7 C8 1.526(3) C7 C9 1.529(4) Se1A C2A 1.824(2) O1A C4A 1.237(3) N1A C2A 1.354(3) N1A C6A 1.383(3) C2A N3A 1.351(3) N3A C4A 1.391(3) C4A C5A 1.434(3) C5A C6A 1.346(3) C6A C7A 1.508(3) C7A C9A 1.528(4) C7A C8A 1.543(4) Se1B C2B 1.835(2) N1B C2B 1.342(3) N1B C6B 1.389(3) O1B C4B 1.226(3) C2B N3B 1.353(3) N3B C4B 1.395(3) C4B C5B 1.441(3) C5B C6B 1.348(3) C6B C7B 1.509(3) C7B C9B 1.515(4) C7B C8B 1.533(3) N1 H1A 0.88 N3 H3A 0.88 N1A H1AA 0.88 N3A H3AA 0.88 N1B H1BA 0.88 N3B H3BA 0.88 C5 H5A 0.95 C7 H7A 1.00 C8 H8C 0.98 C8 H8B 0.98 C8 H8A 0.98 C9 H9C 0.98 C9 H9A 0.98 C9 H9B 0.98 C5A H5AA 0.95 C7A H7AA 1.00 C8A H8AB 0.98 C8A H8AC 0.98 C8A H8AA 0.98 C9A H9AC 0.98 C9A H9AA 0.98 C9A H9AB 0.98 C5B H5BA 0.95 C7B H7BA 1.00 C8B H8BA 0.98 C8B H8BB 0.98 C8B H8BC 0.98 C9B H9BA 0.98 C9B H9BB 0.98 C9B H9BC 0.98 loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_site_symmetry_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA N3 H3A O1B 2_766 0.88 1.91 2.782(3) 169 N1A H1AA O1 . 0.88 2.00 2.860(3) 167 N1B H1BA O1A 2_665 0.88 1.92 2.796(3) 177 N1 H1A Se1 2_776 0.88 2.60 3.460(2) 165 N3B H3BA Se1 2_766 0.88 2.56 3.428(2) 167 N3A H3AA Se1B 2_665 0.88 2.60 3.430(2) 157 _journal_paper_doi 10.1107/S0108768106011426