#------------------------------------------------------------------------------ #$Date: 2016-02-20 01:53:41 +0100 (Sat, 20 Feb 2016) $ #$Revision: 176768 $ #$URL: svn://www.crystallography.net/cod/cif/2/10/05/2100523.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2100523 loop_ _publ_author_name 'V. Tsirelson' 'A. Stash' 'V. Potemkin' 'A. Rykounov' 'A. Shutalev' 'E. Zhurova' 'V. Zhurov' 'A. A. Pinkerton' 'G. Gurskaya' 'V. Zavodnik' _publ_contact_author ; Vladimir G. Tsirelson ; _publ_contact_author_email tsirel@muctr.edu.ru _publ_section_title ; Molecular and crystal properties of ethyl 4,6-dimethyl-2-thioxo-1,2,3,4-tetrahydropyrimidine-5-carboxylate from experimental and theoretical electron densities ; _journal_coeditor_code AV5058 _journal_date_accepted 2006-05-03 _journal_date_recd_electronic 2006-03-07 _journal_issue 4 _journal_name_full 'Acta Crystallographica Section B' _journal_page_first 676 _journal_page_last 688 _journal_paper_category FA _journal_paper_doi 10.1107/S0108768106016326 _journal_volume 62 _journal_year 2006 _chemical_formula_sum 'C9 H14 N2 O2 S' _chemical_formula_weight 214.28 _space_group_IT_number 2 _symmetry_cell_setting triclinic _symmetry_space_group_name_Hall '-P 1' _symmetry_space_group_name_H-M 'P -1' _atom_type_scat_source 'Koritsanszky et al, (2003)' _cell_angle_alpha 87.0550(10) _cell_angle_beta 70.5690(10) _cell_angle_gamma 72.8980(10) _cell_formula_units_Z 2 _cell_length_a 7.2934(2) _cell_length_b 7.8145(2) _cell_length_c 10.2181(3) _cell_measurement_reflns_used 71444 _cell_measurement_temperature 110.00(10) _cell_measurement_theta_max 55.82 _cell_measurement_theta_min 2.12 _cell_volume 524.22(3) _computing_cell_refinement 'Otwinowski & Minor (1997)' _computing_data_collection CrystalClear,(2005) _computing_data_reduction 'Zhurov et al,(2005)' _computing_molecular_graphics 'Koritsanszky et al, (2003)' _computing_publication_material 'Koritsanszky et al, (2003)' _computing_structure_refinement 'Koritsanszky et al, (2003)' _computing_structure_solution 'Sheldrick (1997)' _diffrn_measured_fraction_theta_full 55.82 _diffrn_measurement_device ; Bruker diffractometer with a SMART 6000 CCD detector ; _diffrn_measurement_method \w _diffrn_radiation_type 'Mo K\a' _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0286 _diffrn_reflns_limit_h_max 16 _diffrn_reflns_limit_h_min 0 _diffrn_reflns_limit_k_max 18 _diffrn_reflns_limit_k_min -16 _diffrn_reflns_limit_l_max 23 _diffrn_reflns_limit_l_min -22 _diffrn_reflns_number 71444 _diffrn_reflns_theta_full 55.82 _diffrn_reflns_theta_max 55.82 _diffrn_reflns_theta_min 2.12 _exptl_absorpt_coefficient_mu 0.286 _exptl_absorpt_correction_type none _exptl_crystal_colour colorless _exptl_crystal_density_diffrn 1.358 _exptl_crystal_description 'rhombic ' _exptl_crystal_F_000 228 _exptl_crystal_size_max 0.36 _exptl_crystal_size_mid 0.24 _exptl_crystal_size_min 0.16 _refine_diff_density_max 0.131 _refine_diff_density_min -0.219 _refine_ls_extinction_coef 0.0 _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 1.20 _refine_ls_hydrogen_treatment refall _refine_ls_number_parameters 398 _refine_ls_number_reflns 9412 _refine_ls_R_factor_gt 0.0194 _refine_ls_shift/su_max 0.0202 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details w=1/[s^2^(Fsqd)] _refine_ls_weighting_scheme calc _refine_ls_wR_factor_ref 0.0221 _reflns_number_gt 9412 _reflns_number_total 12501 _reflns_threshold_expression I>3\s _cod_data_source_file av5058.cif _cod_data_source_block GUR2 _cod_original_sg_symbol_H-M P-1 _cod_database_code 2100523 loop_ _symmetry_equiv_pos_site_id _symmetry_equiv_pos_as_xyz 1 +X,+Y,+Z 2 -X,-Y,-Z loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 S 0.01146(2) 0.02336(4) 0.01337(2) -0.00552(2) -0.00531(2) 0.00517(2) O1 0.01176(6) 0.03285(15) 0.01717(8) -0.01151(7) -0.00626(6) 0.00671(9) O2 0.01218(5) 0.02717(12) 0.01323(7) -0.00882(6) -0.00564(5) 0.00576(7) N1 0.01049(5) 0.02014(10) 0.01236(7) -0.00724(6) -0.00465(5) 0.00449(7) N3 0.01038(5) 0.02167(10) 0.01477(7) -0.00641(6) -0.00452(5) 0.00735(7) C2 0.01026(6) 0.01593(9) 0.01216(7) -0.00439(6) -0.00393(5) 0.00299(7) C4 0.00963(6) 0.01910(10) 0.01305(8) -0.00569(6) -0.00376(5) 0.00387(7) C4' 0.01515(8) 0.02637(15) 0.01556(10) 0.00004(9) -0.00329(7) 0.00099(10) C5 0.00923(5) 0.01713(9) 0.01211(7) -0.00532(6) -0.00377(5) 0.00285(7) C5' 0.00957(5) 0.01766(10) 0.01281(7) -0.00539(6) -0.00428(5) 0.00259(7) C6 0.00936(5) 0.01724(9) 0.01135(7) -0.00541(6) -0.00340(5) 0.00262(7) C6' 0.01286(7) 0.03141(17) 0.01321(8) -0.01027(9) -0.00420(6) 0.00678(10) C7 0.01325(7) 0.02095(11) 0.01313(8) -0.00509(7) -0.00550(6) 0.00181(8) C8 0.01982(10) 0.02545(15) 0.01362(9) -0.00616(10) -0.00459(8) 0.00322(10) loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_occupancy S 0.187300(10) 0.96544(2) 0.115640(10) 0.016 1.0000 O1 0.86080(4) 0.76666(6) 0.44893(3) 0.021 1.0000 O2 0.60553(4) 0.69576(5) 0.61292(3) 0.018 1.0000 N1 0.26671(3) 0.82174(5) 0.33850(3) 0.014 1.0000 N3 0.52655(4) 0.90635(5) 0.17878(3) 0.016 1.0000 C2 0.33887(4) 0.89339(5) 0.21355(3) 0.013 1.0000 C4 0.67488(4) 0.82071(5) 0.24809(3) 0.014 1.0000 C4' 0.82546(5) 0.65044(7) 0.16374(4) 0.019 1.0000 C5 0.56472(4) 0.78479(5) 0.39624(3) 0.013 1.0000 C5' 0.68923(4) 0.75005(5) 0.48707(3) 0.013 1.0000 C6 0.36891(4) 0.78006(5) 0.43451(3) 0.013 1.0000 C6' 0.24022(5) 0.73565(7) 0.57232(3) 0.019 1.0000 C7 0.73244(4) 0.64908(6) 0.70039(3) 0.016 1.0000 C8 0.60562(6) 0.60082(7) 0.83881(4) 0.020 1.0000 H1 0.12339 0.81300 0.36711 0.021(5) 1.0000 H3 0.58135 0.96254 0.08855 0.029(5) 1.0000 H4 0.76430 0.91253 0.24388 0.022(4) 1.0000 H41' 0.94100 0.59726 0.20830 0.038(6) 1.0000 H42' 0.89434 0.68682 0.06209 0.023(5) 1.0000 H43' 0.74845 0.55609 0.16028 0.022(4) 1.0000 H61' 0.20632 0.83088 0.65339 0.058(7) 1.0000 H62' 0.10438 0.71738 0.56776 0.063(8) 1.0000 H63' 0.32515 0.61199 0.59844 0.046(6) 1.0000 H71 0.77831 0.76703 0.71180 0.027(5) 1.0000 H72 0.86353 0.53738 0.64578 0.023(5) 1.0000 H81 0.47685 0.71072 0.88634 0.038(6) 1.0000 H82 0.56521 0.48427 0.82788 0.034(5) 1.0000 H83 0.69243 0.56565 0.90617 0.040(6) 1.0000 loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle_site_symmetry_1 _geom_angle_site_symmetry_2 _geom_angle_site_symmetry_3 _geom_angle _geom_angle_publ_flag C5' O2 C7 1_555 1_555 1_555 116.36(3) yes C2 N1 C6 1_555 1_555 1_555 124.02(2) yes C2 N3 C4 1_555 1_555 1_555 125.59(3) yes N3 C2 N1 1_555 1_555 1_555 116.50(3) yes N3 C2 S 1_555 1_555 1_555 123.79(3) yes N1 C2 S 1_555 1_555 1_555 119.70(2) yes N3 C4 C5 1_555 1_555 1_555 109.78(3) yes N3 C4 C4' 1_555 1_555 1_555 109.71(3) yes C5 C4 C4' 1_555 1_555 1_555 112.73(3) yes C6 C5 C5' 1_555 1_555 1_555 125.19(3) yes C6 C5 C4 1_555 1_555 1_555 120.43(3) yes C5' C5 C4 1_555 1_555 1_555 114.34(3) yes O1 C5' O2 1_555 1_555 1_555 122.07(3) yes O1 C5' C5 1_555 1_555 1_555 122.10(3) yes O2 C5' C5 1_555 1_555 1_555 115.81(3) yes C5 C6 N1 1_555 1_555 1_555 119.00(3) yes C5 C6 C6' 1_555 1_555 1_555 128.13(3) yes N1 C6 C6' 1_555 1_555 1_555 112.87(2) yes O2 C7 C8 1_555 1_555 1_555 107.50(3) yes loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_site_symmetry_1 _geom_bond_site_symmetry_2 _geom_bond_distance _geom_bond_publ_flag S C2 1_555 1_555 1.6887(3) yes O1 C5' 1_555 1_555 1.2249(4) yes O2 C5' 1_555 1_555 1.3343(4) yes O2 C7 1_555 1_555 1.4514(4) yes N1 C2 1_555 1_555 1.3687(4) yes N1 C6 1_555 1_555 1.3910(4) yes N3 C2 1_555 1_555 1.3283(4) yes N3 C4 1_555 1_555 1.4679(4) yes C4 C5 1_555 1_555 1.5151(4) yes C4 C4' 1_555 1_555 1.5323(5) yes C5 C6 1_555 1_555 1.3607(4) yes C5 C5' 1_555 1_555 1.4661(4) yes C6 C6' 1_555 1_555 1.4988(4) yes C7 C8 1_555 1_555 1.5094(5) yes