#------------------------------------------------------------------------------ #$Date: 2008-02-24 08:42:19 +0100 (Sun, 24 Feb 2008) $ #$Revision: 156 $ #$URL: svn://www.crystallography.net/cod/cif/2/2100503.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/ # # All data on this site have been placed in the public domain by the # contributors. # data_2100503 loop_ _publ_author_name 'Sharif, Shasad' 'Powell, Douglas R.' 'Schagen, David' 'Steiner, Thomas' 'Toney, Michael D.' 'Fogle, Emily' 'Limbach, Hans-Heinrich' _publ_section_title ; X-Ray Crystallographic Structures of Enamine and Amine Schiff Bases of Pyridoxal and Theri 1:1 Hydrogen-Bonded Complexes with Benzoic Acid Derivatives: Evidence for Coupled Inter- and Intramolecular Proton Transfer ; _journal_coeditor_code SN5027 _journal_issue 3 _journal_name_full 'Acta Crystallographica, Section B' _journal_page_first 480 _journal_page_last 487 _journal_volume 62 _journal_year 2006 _chemical_formula_moiety 'C15 H17 N2 O2, C7 H4 N O4' _chemical_formula_sum 'C22 H21 N3 O6' _chemical_formula_weight 423.42 _chemical_name_systematic ; ? ; _symmetry_cell_setting triclinic _symmetry_space_group_name_Hall '-P 1' _symmetry_space_group_name_H-M 'P -1' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_creation_method SHELXL-97 _cell_angle_alpha 114.88(4) _cell_angle_beta 99.61(5) _cell_angle_gamma 96.03(5) _cell_formula_units_Z 2 _cell_length_a 7.683(5) _cell_length_b 12.188(6) _cell_length_c 12.562(6) _cell_measurement_reflns_used 25 _cell_measurement_temperature 295(2) _cell_measurement_theta_max 15.0 _cell_measurement_theta_min 7.0 _cell_volume 1031.8(10) _computing_molecular_graphics 'SHELXTL (Sheldrick, 2000)' _computing_publication_material 'SHELXTL (Sheldrick, 2000)' _computing_structure_refinement 'SHELXTL (Sheldrick, 2000)' _computing_structure_solution 'SHELXTL (Sheldrick, 2000)' _diffrn_ambient_temperature 295(2) _diffrn_measured_fraction_theta_full 0.992 _diffrn_measured_fraction_theta_max 0.992 _diffrn_measurement_device_type 'Stoe four-circle diffractometer' _diffrn_measurement_method \w _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0176 _diffrn_reflns_av_sigmaI/netI 0.0299 _diffrn_reflns_limit_h_max 8 _diffrn_reflns_limit_h_min -9 _diffrn_reflns_limit_k_max 14 _diffrn_reflns_limit_k_min -10 _diffrn_reflns_limit_l_max 14 _diffrn_reflns_limit_l_min -14 _diffrn_reflns_number 3866 _diffrn_reflns_theta_full 25.00 _diffrn_reflns_theta_max 25.00 _diffrn_reflns_theta_min 2.74 _diffrn_standards_decay_% 3 _diffrn_standards_interval_time 30 _diffrn_standards_number 3 _exptl_absorpt_coefficient_mu 0.101 _exptl_absorpt_correction_T_max 0.990 _exptl_absorpt_correction_T_min 0.961 _exptl_absorpt_correction_type none _exptl_crystal_colour yellow _exptl_crystal_density_diffrn 1.363 _exptl_crystal_density_method 'not measured' _exptl_crystal_description plate _exptl_crystal_F_000 444 _exptl_crystal_size_max 0.40 _exptl_crystal_size_mid 0.20 _exptl_crystal_size_min 0.10 _refine_diff_density_max 0.197 _refine_diff_density_min -0.205 _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 1.003 _refine_ls_hydrogen_treatment mixed _refine_ls_matrix_type full _refine_ls_number_parameters 289 _refine_ls_number_reflns 3591 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 1.003 _refine_ls_R_factor_all 0.0837 _refine_ls_R_factor_gt 0.0493 _refine_ls_shift/su_max 0.000 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w=1/[\s^2^(Fo^2^)+(0.0780P)^2^+0.2500P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.1268 _refine_ls_wR_factor_ref 0.1534 _reflns_number_gt 2383 _reflns_number_total 3591 _reflns_threshold_expression I>2\s(I) _[local]_cod_data_source_file sn5027.cif loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, -y, -z' loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _atom_site_type_symbol _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy N N1 0.3837(3) 0.39957(19) 0.61412(18) 0.0491(5) Uani d . 1 H H1 0.436(3) 0.490(3) 0.661(2) 0.059 Uiso d . 1 N N2 0.1882(3) -0.05211(18) 0.43292(19) 0.0543(5) Uani d . 1 C C2 0.4127(3) 0.3212(2) 0.6597(2) 0.0505(6) Uani d . 1 C C3 0.3362(3) 0.1967(2) 0.5884(2) 0.0508(6) Uani d . 1 C C4 0.2308(3) 0.1581(2) 0.4724(2) 0.0455(6) Uani d . 1 C C5 0.2015(3) 0.2461(2) 0.4302(2) 0.0448(6) Uani d . 1 C C6 0.2821(3) 0.3653(2) 0.5036(2) 0.0498(6) Uani d . 1 H H6 0.2665 0.4247 0.4766 0.060 Uiso calc R 1 C C2' 0.5234(4) 0.3678(2) 0.7851(2) 0.0652(8) Uani d . 1 H H2'A 0.5569 0.4560 0.8211 0.098 Uiso d R 1 H H2'B 0.6299 0.3329 0.7829 0.098 Uiso d R 1 H H2'C 0.4546 0.3444 0.8320 0.098 Uiso d R 1 O O3' 0.3704(3) 0.11905(18) 0.63546(17) 0.0718(6) Uani d . 1 H H3' 0.314(4) 0.040(3) 0.574(3) 0.086 Uiso d . 1 C C4' 0.1539(3) 0.0284(2) 0.3975(2) 0.0487(6) Uani d . 1 H H4' 0.0782 0.0037 0.3221 0.058 Uiso calc R 1 O O5' -0.0915(2) 0.15341(17) 0.29060(16) 0.0599(5) Uani d . 1 H H5' -0.161(4) 0.217(3) 0.313(3) 0.072 Uiso d . 1 C C5' 0.0863(3) 0.2116(2) 0.3073(2) 0.0539(6) Uani d . 1 H H5'A 0.0832 0.2855 0.2961 0.065 Uiso calc R 1 H H5'B 0.1404 0.1568 0.2463 0.065 Uiso calc R 1 C C1" -0.0151(4) -0.4320(2) 0.2301(3) 0.0601(7) Uani d . 1 C C2" 0.0859(4) -0.3819(3) 0.3470(3) 0.0668(8) Uani d . 1 H H2" 0.1094 -0.4331 0.3833 0.080 Uiso calc R 1 C C3" 0.1523(4) -0.2573(2) 0.4106(2) 0.0585(7) Uani d . 1 H H3" 0.2216 -0.2253 0.4891 0.070 Uiso calc R 1 C C4" 0.1175(3) -0.1796(2) 0.3598(2) 0.0500(6) Uani d . 1 C C5" 0.0193(4) -0.2286(2) 0.2422(3) 0.0660(8) Uani d . 1 H H5" -0.0025 -0.1776 0.2055 0.079 Uiso calc R 1 C C6" -0.0461(4) -0.3535(2) 0.1798(3) 0.0667(8) Uani d . 1 H H6" -0.1135 -0.3859 0.1008 0.080 Uiso calc R 1 C C1"' -0.0881(5) -0.5683(3) 0.1590(3) 0.0893(10) Uani d . 1 H H1"A -0.1705 -0.5843 0.0854 0.134 Uiso d R 1 H H1"B -0.1497 -0.5969 0.2058 0.134 Uiso d R 1 H H1"C 0.0095 -0.6108 0.1405 0.134 Uiso d R 1 O O1A 0.3064(2) 0.67846(15) 0.65137(16) 0.0641(5) Uani d . 1 O O2A 0.5470(2) 0.62426(15) 0.72514(16) 0.0579(5) Uani d . 1 O O3A 0.8271(4) 0.7693(2) 0.9965(3) 0.1141(10) Uani d . 1 O O4A 0.5413(4) 0.7212(2) 0.9720(2) 0.0875(7) Uani d . 1 N N1A 0.6726(4) 0.7791(2) 0.9651(2) 0.0654(6) Uani d . 1 C C1A 0.5391(3) 0.8338(2) 0.8060(2) 0.0418(5) Uani d . 1 C C2A 0.6496(3) 0.8689(2) 0.9179(2) 0.0467(6) Uani d . 1 C C3A 0.7410(3) 0.9875(2) 0.9901(2) 0.0600(7) Uani d . 1 H H3A 0.8153 1.0084 1.0650 0.072 Uiso calc R 1 C C4A 0.7209(4) 1.0747(2) 0.9496(3) 0.0670(8) Uani d . 1 H H4A 0.7822 1.1556 0.9976 0.080 Uiso calc R 1 C C5A 0.6120(4) 1.0443(2) 0.8398(3) 0.0602(7) Uani d . 1 H H5A 0.5995 1.1041 0.8130 0.072 Uiso calc R 1 C C6A 0.5209(3) 0.9252(2) 0.7690(2) 0.0493(6) Uani d . 1 H H6A 0.4454 0.9053 0.6948 0.059 Uiso calc R 1 C C7A 0.4535(3) 0.7015(2) 0.7206(2) 0.0447(6) Uani d . 1 loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 N1 0.0503(12) 0.0378(11) 0.0483(12) 0.0038(9) 0.0024(9) 0.0135(9) N2 0.0649(13) 0.0409(11) 0.0467(12) 0.0016(10) 0.0014(10) 0.0163(10) C2 0.0528(14) 0.0448(14) 0.0441(14) 0.0059(11) 0.0030(11) 0.0146(11) C3 0.0572(15) 0.0432(14) 0.0464(14) 0.0048(11) 0.0013(12) 0.0201(11) C4 0.0470(13) 0.0408(13) 0.0414(13) 0.0048(10) 0.0050(10) 0.0145(10) C5 0.0423(13) 0.0450(13) 0.0429(13) 0.0037(10) 0.0055(10) 0.0185(11) C6 0.0512(14) 0.0454(14) 0.0502(15) 0.0044(11) 0.0031(12) 0.0232(12) C2' 0.0732(18) 0.0538(16) 0.0482(15) 0.0019(13) -0.0078(13) 0.0143(13) O3' 0.1005(15) 0.0470(11) 0.0522(11) 0.0032(10) -0.0166(10) 0.0225(9) C4' 0.0516(14) 0.0443(14) 0.0412(13) 0.0036(11) 0.0036(11) 0.0146(11) O5' 0.0507(11) 0.0534(11) 0.0563(11) 0.0033(8) -0.0026(8) 0.0137(9) C5' 0.0503(15) 0.0565(15) 0.0506(15) 0.0049(12) 0.0019(12) 0.0247(12) C1" 0.0660(17) 0.0449(15) 0.0658(18) 0.0002(12) 0.0148(14) 0.0240(13) C2" 0.092(2) 0.0536(16) 0.0615(18) 0.0112(15) 0.0146(16) 0.0341(14) C3" 0.0751(18) 0.0520(15) 0.0442(14) 0.0068(13) 0.0022(13) 0.0232(12) C4" 0.0574(15) 0.0417(13) 0.0446(14) 0.0031(11) 0.0061(11) 0.0173(11) C5" 0.085(2) 0.0454(15) 0.0560(16) -0.0035(14) -0.0111(14) 0.0259(13) C6" 0.0773(19) 0.0489(16) 0.0563(16) -0.0071(13) -0.0092(14) 0.0206(13) C1"' 0.116(3) 0.0474(17) 0.092(2) -0.0062(17) 0.011(2) 0.0287(17) O1A 0.0567(11) 0.0497(10) 0.0574(11) -0.0006(8) -0.0171(9) 0.0110(8) O2A 0.0573(10) 0.0389(9) 0.0595(11) 0.0051(8) -0.0059(8) 0.0132(8) O3A 0.1031(19) 0.113(2) 0.118(2) 0.0220(16) -0.0329(16) 0.0648(17) O4A 0.1167(19) 0.0785(15) 0.0878(17) 0.0207(14) 0.0367(15) 0.0512(13) N1A 0.0807(18) 0.0622(15) 0.0434(12) 0.0130(13) -0.0045(12) 0.0215(11) C1A 0.0400(12) 0.0396(12) 0.0385(12) 0.0044(10) 0.0040(10) 0.0132(10) C2A 0.0498(14) 0.0448(13) 0.0387(13) 0.0079(11) 0.0040(11) 0.0150(11) C3A 0.0531(15) 0.0548(16) 0.0437(14) 0.0014(12) -0.0040(12) 0.0031(12) C4A 0.0655(18) 0.0369(14) 0.0710(19) -0.0052(12) 0.0054(15) 0.0057(13) C5A 0.0643(17) 0.0418(14) 0.0691(18) 0.0044(12) 0.0109(14) 0.0230(13) C6A 0.0495(14) 0.0474(14) 0.0455(14) 0.0064(11) 0.0036(11) 0.0191(11) C7A 0.0456(13) 0.0417(13) 0.0373(12) -0.0004(11) 0.0012(11) 0.0140(10) loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance _geom_bond_publ_flag N1 C2 1.324(3) y N1 C6 1.339(3) y N1 H1 1.01(3) ? N2 C4' 1.270(3) y N2 C4" 1.417(3) ? C2 C3 1.394(3) ? C2 C2' 1.492(4) ? C3 O3' 1.336(3) y C3 C4 1.396(3) y C4 C5 1.405(3) ? C4 C4' 1.449(3) y C5 C6 1.356(3) ? C5 C5' 1.504(3) y C6 H6 0.9300 ? C2' H2'A 0.9600 ? C2' H2'B 0.9600 ? C2' H2'C 0.9600 ? O3' H3' 0.95(3) ? C4' H4' 0.9300 ? O5' C5' 1.410(3) y O5' H5' 0.96(3) ? C5' H5'A 0.9700 ? C5' H5'B 0.9700 ? C1" C6" 1.369(4) ? C1" C2" 1.378(4) ? C1" C1"' 1.504(4) ? C2" C3" 1.373(4) ? C2" H2" 0.9300 ? C3" C4" 1.372(3) ? C3" H3" 0.9300 ? C4" C5" 1.378(4) ? C5" C6" 1.375(4) ? C5" H5" 0.9300 ? C6" H6" 0.9300 ? C1"' H1"A 0.9600 ? C1"' H1"B 0.9600 ? C1"' H1"C 0.9600 ? O1A C7A 1.230(3) y O2A C7A 1.256(3) y O3A N1A 1.221(3) ? O4A N1A 1.206(3) ? N1A C2A 1.460(3) ? C1A C2A 1.378(3) ? C1A C6A 1.387(3) ? C1A C7A 1.507(3) y C2A C3A 1.370(4) ? C3A C4A 1.369(4) ? C3A H3A 0.9300 ? C4A C5A 1.364(4) ? C4A H4A 0.9300 ? C5A C6A 1.371(4) ? C5A H5A 0.9300 ? C6A H6A 0.9300 ? loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle _geom_angle_publ_flag C2 N1 C6 123.2(2) y C2 N1 H1 122.1(14) ? C6 N1 H1 114.8(14) ? C4' N2 C4" 122.0(2) ? N1 C2 C3 118.4(2) ? N1 C2 C2' 119.7(2) ? C3 C2 C2' 122.0(2) ? O3' C3 C2 117.3(2) ? O3' C3 C4 123.0(2) y C2 C3 C4 119.8(2) ? C3 C4 C5 119.2(2) ? C3 C4 C4' 119.8(2) y C5 C4 C4' 121.0(2) ? C6 C5 C4 117.9(2) ? C6 C5 C5' 119.9(2) y C4 C5 C5' 122.2(2) ? N1 C6 C5 121.6(2) ? N1 C6 H6 119.2 ? C5 C6 H6 119.2 ? C2 C2' H2'A 109.5 ? C2 C2' H2'B 109.5 ? H2'A C2' H2'B 109.5 ? C2 C2' H2'C 109.5 ? H2'A C2' H2'C 109.5 ? H2'B C2' H2'C 109.5 ? C3 O3' H3' 105.3(19) ? N2 C4' C4 121.1(2) y N2 C4' H4' 119.4 ? C4 C4' H4' 119.4 ? C5' O5' H5' 107.0(17) ? O5' C5' C5 112.9(2) y O5' C5' H5'A 109.0 ? C5 C5' H5'A 109.0 ? O5' C5' H5'B 109.0 ? C5 C5' H5'B 109.0 ? H5'A C5' H5'B 107.8 ? C6" C1" C2" 117.8(2) ? C6" C1" C1"' 120.8(3) ? C2" C1" C1"' 121.4(3) ? C3" C2" C1" 120.8(3) ? C3" C2" H2" 119.6 ? C1" C2" H2" 119.6 ? C4" C3" C2" 120.8(2) ? C4" C3" H3" 119.6 ? C2" C3" H3" 119.6 ? C3" C4" C5" 119.1(2) ? C3" C4" N2 116.9(2) ? C5" C4" N2 124.0(2) ? C6" C5" C4" 119.4(2) ? C6" C5" H5" 120.3 ? C4" C5" H5" 120.3 ? C1" C6" C5" 122.2(3) ? C1" C6" H6" 118.9 ? C5" C6" H6" 118.9 ? C1" C1"' H1"A 109.5 ? C1" C1"' H1"B 109.5 ? H1"A C1"' H1"B 109.5 ? C1" C1"' H1"C 109.5 ? H1"A C1"' H1"C 109.5 ? H1"B C1"' H1"C 109.5 ? O4A N1A O3A 124.4(3) ? O4A N1A C2A 119.1(2) ? O3A N1A C2A 116.5(3) ? C2A C1A C6A 116.9(2) ? C2A C1A C7A 122.9(2) ? C6A C1A C7A 119.9(2) ? C3A C2A C1A 122.6(2) ? C3A C2A N1A 116.9(2) ? C1A C2A N1A 120.5(2) ? C4A C3A C2A 118.6(2) ? C4A C3A H3A 120.7 ? C2A C3A H3A 120.7 ? C5A C4A C3A 120.7(2) ? C5A C4A H4A 119.6 ? C3A C4A H4A 119.6 ? C4A C5A C6A 119.8(3) ? C4A C5A H5A 120.1 ? C6A C5A H5A 120.1 ? C5A C6A C1A 121.3(2) ? C5A C6A H6A 119.4 ? C1A C6A H6A 119.4 ? O1A C7A O2A 126.1(2) y O1A C7A C1A 119.2(2) y O2A C7A C1A 114.7(2) y loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion _geom_torsion_publ_flag C6 N1 C2 C3 1.1(4) ? C6 N1 C2 C2' -178.2(2) ? N1 C2 C3 O3' 178.7(2) ? C2' C2 C3 O3' -2.0(4) ? N1 C2 C3 C4 -0.5(4) ? C2' C2 C3 C4 178.7(2) ? O3' C3 C4 C5 179.9(2) ? C2 C3 C4 C5 -0.9(4) ? O3' C3 C4 C4' -0.3(4) ? C2 C3 C4 C4' 178.9(2) ? C3 C4 C5 C6 1.8(4) ? C4' C4 C5 C6 -178.0(2) ? C3 C4 C5 C5' -178.7(2) ? C4' C4 C5 C5' 1.5(4) ? C2 N1 C6 C5 -0.1(4) ? C4 C5 C6 N1 -1.4(4) ? C5' C5 C6 N1 179.1(2) ? C4" N2 C4' C4 -178.6(2) ? C3 C4 C4' N2 -3.7(4) ? C5 C4 C4' N2 176.1(2) ? C6 C5 C5' O5' -122.0(3) y C4 C5 C5' O5' 58.5(3) ? C6" C1" C2" C3" 0.3(4) ? C1"' C1" C2" C3" 179.7(3) ? C1" C2" C3" C4" 0.9(5) ? C2" C3" C4" C5" -2.0(4) ? C2" C3" C4" N2 178.7(3) ? C4' N2 C4" C3" -175.3(2) ? C4' N2 C4" C5" 5.5(4) ? C3" C4" C5" C6" 1.9(5) ? N2 C4" C5" C6" -178.9(3) ? C2" C1" C6" C5" -0.3(5) ? C1"' C1" C6" C5" -179.8(3) ? C4" C5" C6" C1" -0.8(5) ? C6A C1A C2A C3A -1.1(4) ? C7A C1A C2A C3A 173.4(2) ? C6A C1A C2A N1A 178.4(2) ? C7A C1A C2A N1A -7.1(4) ? O4A N1A C2A C3A 124.2(3) ? O3A N1A C2A C3A -55.0(3) ? O4A N1A C2A C1A -55.4(4) ? O3A N1A C2A C1A 125.4(3) ? C1A C2A C3A C4A 0.4(4) ? N1A C2A C3A C4A -179.1(2) ? C2A C3A C4A C5A 0.0(4) ? C3A C4A C5A C6A 0.2(4) ? C4A C5A C6A C1A -1.0(4) ? C2A C1A C6A C5A 1.4(4) ? C7A C1A C6A C5A -173.3(2) ? C2A C1A C7A O1A 149.2(2) ? C6A C1A C7A O1A -36.5(3) y C2A C1A C7A O2A -33.5(3) ? C6A C1A C7A O2A 140.9(2) y loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_site_symmetry_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA N1 H1 O2A . 1.01(3) 1.55(3) 2.549(3) 170(2) N1 H1 O1A . 1.01(3) 2.63(3) 3.362(3) 129.4(18) O3' H3' N2 . 0.95(3) 1.69(3) 2.553(3) 150(3) O5' H5' O1A 2_566 0.96(3) 1.75(3) 2.704(3) 175(3)