#------------------------------------------------------------------------------ #$Date: 2017-10-13 07:28:26 +0200 (Fri, 13 Oct 2017) $ #$Revision: 201972 $ #$URL: svn://www.crystallography.net/cod/cif/2/10/03/2100390.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2100390 loop_ _publ_author_name 'Hosoya, Takaaki' 'Uekusa, Hidehiro' 'Ohashi, Yuji' 'Ohhara, Takashi' 'Tanaka, Ichiro' 'Niimura, Nobuo' _publ_section_title ; Neutron diffraction analysis of deuterium transfer in chiral \b-thiolactam formation in the crystalline state ; _journal_coeditor_code OG5014 _journal_date_accepted 2005-11-22 _journal_date_recd_electronic 2005-07-29 _journal_issue 1 _journal_name_full 'Acta Crystallographica Section B' _journal_page_first 153 _journal_page_last 160 _journal_paper_category FA _journal_paper_doi 10.1107/S0108768105038656 _journal_volume 62 _journal_year 2006 _chemical_formula_moiety 'C21 H9 D14 N S' _chemical_formula_sum 'C21 H9 D14 N S' _chemical_formula_weight 335.43 _chemical_melting_point 346 _chemical_name_common N,N-di(benzyl-d~7~)-1-cyclohexenecarbothioamide _chemical_name_systematic N,N-di(benzyl-d~7~)-1-cyclohexenecarbothioamide _space_group_IT_number 4 _symmetry_cell_setting monoclinic _symmetry_space_group_name_Hall 'P 2yb' _symmetry_space_group_name_H-M 'P 1 21 1' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_creation_method 'SHELXL-97 and manual editing' _cell_angle_alpha 90.00 _cell_angle_beta 98.364(4) _cell_angle_gamma 90.00 _cell_formula_units_Z 2 _cell_length_a 8.5992(7) _cell_length_b 10.1263(7) _cell_length_c 10.0412(7) _cell_measurement_reflns_used 7397 _cell_measurement_temperature 173(2) _cell_measurement_theta_max 25.34 _cell_measurement_theta_min 2.05 _cell_volume 865.07(11) _computing_cell_refinement 'PROCESS-AUTO (Rigaku, 1998)' _computing_data_collection 'PROCESS-AUTO (Rigaku, 1998)' _computing_data_reduction 'CrystalStructure 3.6 (Rigaku, 2004)' _computing_molecular_graphics 'ORTEP-3 for Windows (Farrugia, 1998)' _computing_publication_material 'SHELXL-97 (Sheldrick, 1997)' _computing_structure_refinement 'SHELXL-97 (Sheldrick, 1997)' _computing_structure_solution 'SIR-2004 (Burla, 2005)' _diffrn_ambient_temperature 173(2) _diffrn_detector_area_resol_mean 10 _diffrn_measured_fraction_theta_full 0.998 _diffrn_measured_fraction_theta_max 0.998 _diffrn_measurement_device_type 'Rigaku RAXIS-RAPID' _diffrn_measurement_method '\w scan' _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'Rigaku rotating anode Ultrax18' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0314 _diffrn_reflns_av_sigmaI/netI 0.0226 _diffrn_reflns_limit_h_max 10 _diffrn_reflns_limit_h_min -10 _diffrn_reflns_limit_k_max 11 _diffrn_reflns_limit_k_min -12 _diffrn_reflns_limit_l_max 12 _diffrn_reflns_limit_l_min -12 _diffrn_reflns_number 7397 _diffrn_reflns_theta_full 25.34 _diffrn_reflns_theta_max 25.34 _diffrn_reflns_theta_min 2.05 _exptl_absorpt_coefficient_mu 0.187 _exptl_absorpt_correction_T_max 0.9816 _exptl_absorpt_correction_T_min 0.9461 _exptl_absorpt_correction_type multi-scan _exptl_absorpt_process_details ; ABSCOR, T.Higashi(1995) HIGASHI, T. (1995). Abscor - Empirical Absorption Correction based on Fourier Series Approximation. Rigaku Corporation, Tokyo, Japan. ; _exptl_crystal_colour 'pale yellow' _exptl_crystal_density_diffrn 1.234 _exptl_crystal_density_method 'not measured' _exptl_crystal_description prism _exptl_crystal_F_000 344 _exptl_crystal_size_max 0.30 _exptl_crystal_size_mid 0.10 _exptl_crystal_size_min 0.10 _refine_diff_density_max 0.160 _refine_diff_density_min -0.169 _refine_ls_abs_structure_details 'Flack H D (1983), Acta Cryst. A39, 876-881' _refine_ls_abs_structure_Flack -0.02(5) _refine_ls_extinction_coef 0.050(3) _refine_ls_extinction_expression Fc^*^=kFc[1+0.001xFc^2^\l^3^/sin(2\q)]^-1/4^ _refine_ls_extinction_method SHELXL _refine_ls_goodness_of_fit_ref 1.074 _refine_ls_hydrogen_treatment refall _refine_ls_matrix_type full _refine_ls_number_parameters 301 _refine_ls_number_reflns 2850 _refine_ls_number_restraints 1 _refine_ls_restrained_S_all 1.073 _refine_ls_R_factor_all 0.0278 _refine_ls_R_factor_gt 0.0272 _refine_ls_shift/su_max 0.000 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w=1/[\s^2^(Fo^2^)+(0.0352P)^2^+0.1521P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.0616 _refine_ls_wR_factor_ref 0.0619 _reflns_number_gt 2807 _reflns_number_total 2850 _reflns_threshold_expression >2sigma(I) _cod_data_source_file og5014.cif _cod_data_source_block xrayinit _cod_original_sg_symbol_H-M 'P 21' _cod_database_code 2100390 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, y+1/2, -z' loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_calc_flag _atom_site_occupancy _atom_site_type_symbol S1 0.44364(4) 0.95991(4) 0.17728(3) 0.02203(11) Uani d 1 S N1 0.63270(14) 1.05319(13) 0.01080(12) 0.0187(3) Uani d 1 N C16 0.47237(17) 1.03036(17) -0.21336(16) 0.0203(3) Uani d 1 C C17 0.49938(17) 0.89530(17) -0.22062(16) 0.0216(3) Uani d 1 C C20 0.3858(2) 1.0329(2) -0.45272(17) 0.0295(4) Uani d 1 C C18 0.46862(18) 0.82915(19) -0.34326(17) 0.0255(4) Uani d 1 C C9 0.89214(17) 1.16799(16) 0.06403(15) 0.0198(3) Uani d 1 C C2 0.76109(16) 0.93989(16) 0.21078(14) 0.0194(3) Uani d 1 C C19 0.41178(19) 0.8983(2) -0.45916(18) 0.0280(4) Uani d 1 C C15 0.49696(17) 1.10328(18) -0.08056(15) 0.0217(3) Uani d 1 C C10 1.04763(17) 1.13195(16) 0.10623(15) 0.0210(3) Uani d 1 C C11 1.14360(17) 1.21243(18) 0.19497(15) 0.0232(3) Uani d 1 C C21 0.41627(19) 1.09881(19) -0.33034(15) 0.0251(4) Uani d 1 C C6 0.96030(17) 0.9629(2) 0.41835(15) 0.0253(3) Uani d 1 C C8 0.78741(18) 1.08095(17) -0.03285(15) 0.0223(3) Uani d 1 C C4 0.9800(2) 0.77661(19) 0.25875(18) 0.0287(4) Uani d 1 C C7 0.79850(19) 1.00387(18) 0.34808(16) 0.0238(3) Uani d 1 C C12 1.08620(18) 1.32701(17) 0.24394(15) 0.0239(3) Uani d 1 C C13 0.93109(19) 1.36321(18) 0.20215(17) 0.0257(3) Uani d 1 C C1 0.61716(17) 0.98896(14) 0.12413(14) 0.0187(3) Uani d 1 C C3 0.84247(18) 0.83902(17) 0.17126(16) 0.0241(3) Uani d 1 C C14 0.83554(18) 1.28508(17) 0.11120(16) 0.0238(3) Uani d 1 C C5 0.98485(19) 0.81522(19) 0.40616(17) 0.0289(4) Uani d 1 C H17 0.5366(19) 0.8470(18) -0.1403(17) 0.014(4) Uiso d 1 H H20 0.349(2) 1.084(2) -0.531(2) 0.026(5) Uiso d 1 H H18 0.486(2) 0.731(2) -0.3470(18) 0.024(4) Uiso d 1 H H19 0.396(2) 0.853(2) -0.544(2) 0.029(5) Uiso d 1 H H15A 0.5136(19) 1.194(2) -0.0981(16) 0.017(4) Uiso d 1 H H15B 0.402(2) 1.0882(19) -0.0323(17) 0.022(4) Uiso d 1 H H10 1.0903(18) 1.0490(18) 0.0756(16) 0.014(4) Uiso d 1 H H11 1.253(2) 1.1888(19) 0.2269(18) 0.028(5) Uiso d 1 H H21 0.400(2) 1.193(2) -0.3245(18) 0.028(5) Uiso d 1 H H6B 0.971(2) 0.988(2) 0.515(2) 0.037(5) Uiso d 1 H H6A 1.039(2) 1.0059(19) 0.3772(19) 0.028(5) Uiso d 1 H H8B 0.7643(19) 1.1245(19) -0.1196(18) 0.017(4) Uiso d 1 H H8A 0.839(2) 0.9954(19) -0.0448(17) 0.020(4) Uiso d 1 H H4A 1.078(3) 0.808(2) 0.226(2) 0.039(6) Uiso d 1 H H4B 0.975(2) 0.682(2) 0.246(2) 0.029(5) Uiso d 1 H H7A 0.717(2) 0.9801(19) 0.4051(17) 0.025(4) Uiso d 1 H H7B 0.790(2) 1.101(2) 0.3378(19) 0.032(5) Uiso d 1 H H12 1.155(2) 1.3792(19) 0.3100(17) 0.020(4) Uiso d 1 H H13 0.889(2) 1.438(2) 0.2380(17) 0.024(4) Uiso d 1 H H3 0.815(2) 0.802(2) 0.077(2) 0.034(5) Uiso d 1 H H14 0.727(2) 1.3122(18) 0.0776(17) 0.020(4) Uiso d 1 H H5A 0.900(2) 0.767(2) 0.447(2) 0.036(5) Uiso d 1 H H5B 1.094(2) 0.792(2) 0.4573(19) 0.032(5) Uiso d 1 H loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 S1 0.01794(16) 0.0244(2) 0.02414(18) -0.00081(15) 0.00429(12) 0.00096(17) N1 0.0169(6) 0.0216(7) 0.0170(6) -0.0008(5) 0.0004(4) -0.0003(5) C16 0.0131(6) 0.0255(9) 0.0218(8) -0.0029(6) 0.0004(5) 0.0030(7) C17 0.0159(7) 0.0273(9) 0.0204(7) -0.0011(6) -0.0010(6) 0.0033(7) C20 0.0282(8) 0.0372(11) 0.0213(8) -0.0036(7) -0.0027(6) 0.0072(8) C18 0.0183(7) 0.0295(10) 0.0285(8) -0.0018(7) 0.0022(6) -0.0038(7) C9 0.0182(7) 0.0230(8) 0.0184(7) -0.0019(6) 0.0033(5) 0.0032(6) C2 0.0174(6) 0.0206(8) 0.0199(7) -0.0034(6) 0.0014(5) 0.0013(6) C19 0.0238(8) 0.0383(10) 0.0214(8) -0.0054(7) 0.0012(6) -0.0041(8) C15 0.0210(7) 0.0210(9) 0.0221(8) 0.0019(6) -0.0004(6) 0.0015(7) C10 0.0204(7) 0.0215(9) 0.0217(7) -0.0003(6) 0.0049(6) 0.0024(6) C11 0.0182(7) 0.0284(9) 0.0225(7) -0.0004(6) 0.0015(6) 0.0060(7) C21 0.0236(7) 0.0263(10) 0.0244(8) -0.0021(7) -0.0002(6) 0.0044(7) C6 0.0245(7) 0.0281(8) 0.0214(7) -0.0041(7) -0.0033(6) 0.0022(8) C8 0.0209(7) 0.0270(9) 0.0197(7) -0.0023(6) 0.0054(6) -0.0013(7) C4 0.0246(8) 0.0249(9) 0.0357(9) 0.0042(7) 0.0008(6) -0.0001(8) C7 0.0270(8) 0.0235(9) 0.0199(7) 0.0004(6) -0.0003(6) -0.0006(6) C12 0.0239(7) 0.0267(9) 0.0204(7) -0.0064(7) 0.0008(6) 0.0017(7) C13 0.0257(8) 0.0239(9) 0.0279(8) 0.0010(6) 0.0052(6) -0.0026(7) C1 0.0212(7) 0.0164(9) 0.0183(7) -0.0015(5) 0.0020(5) -0.0045(5) C3 0.0216(7) 0.0249(9) 0.0254(8) 0.0001(6) 0.0024(6) -0.0023(7) C14 0.0190(7) 0.0264(9) 0.0262(8) 0.0004(6) 0.0033(6) 0.0003(7) C5 0.0236(8) 0.0303(9) 0.0305(8) 0.0003(7) -0.0039(6) 0.0070(7) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' S S 0.1246 0.1234 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle _geom_angle_publ_flag C1 N1 C15 122.20(13) no C1 N1 C8 123.27(12) no C15 N1 C8 114.53(12) no C21 C16 C17 119.12(17) no C21 C16 C15 119.28(16) no C17 C16 C15 121.56(16) no C16 C17 C18 120.49(17) no C16 C17 H17 119.7(11) no C18 C17 H17 119.8(11) no C19 C20 C21 120.23(18) no C19 C20 H20 121.8(12) no C21 C20 H20 117.9(12) no C19 C18 C17 119.86(19) no C19 C18 H18 120.3(10) no C17 C18 H18 119.9(10) no C14 C9 C10 119.23(14) no C14 C9 C8 120.77(14) no C10 C9 C8 120.00(15) no C3 C2 C1 120.64(13) no C3 C2 C7 123.25(13) no C1 C2 C7 115.91(13) no C20 C19 C18 119.90(18) no C20 C19 H19 120.4(12) no C18 C19 H19 119.6(12) no N1 C15 C16 112.29(13) no N1 C15 H15A 108.9(10) no C16 C15 H15A 108.4(10) no N1 C15 H15B 105.8(10) no C16 C15 H15B 109.1(10) no H15A C15 H15B 112.6(15) no C11 C10 C9 119.81(15) no C11 C10 H10 119.2(9) no C9 C10 H10 121.0(9) no C12 C11 C10 120.85(14) no C12 C11 H11 117.7(11) no C10 C11 H11 121.4(11) no C16 C21 C20 120.39(18) no C16 C21 H21 118.5(11) no C20 C21 H21 121.2(11) no C5 C6 C7 111.06(14) no C5 C6 H6B 109.4(13) no C7 C6 H6B 109.6(12) no C5 C6 H6A 107.6(12) no C7 C6 H6A 109.4(11) no H6B C6 H6A 109.7(16) no N1 C8 C9 113.32(12) no N1 C8 H8B 106.0(10) no C9 C8 H8B 109.8(11) no N1 C8 H8A 107.8(10) no C9 C8 H8A 110.7(10) no H8B C8 H8A 109.0(14) no C3 C4 C5 111.51(14) no C3 C4 H4A 107.4(13) no C5 C4 H4A 109.6(12) no C3 C4 H4B 109.1(12) no C5 C4 H4B 112.0(12) no H4A C4 H4B 107.2(18) no C2 C7 C6 111.34(13) no C2 C7 H7A 110.1(10) no C6 C7 H7A 109.9(10) no C2 C7 H7B 109.1(11) no C6 C7 H7B 111.4(11) no H7A C7 H7B 104.7(16) no C11 C12 C13 119.50(15) no C11 C12 H12 119.1(11) no C13 C12 H12 121.4(11) no C14 C13 C12 120.03(17) no C14 C13 H13 119.7(10) no C12 C13 H13 120.2(10) no N1 C1 C2 118.85(12) no N1 C1 S1 124.02(11) no C2 C1 S1 117.13(10) no C2 C3 C4 123.41(14) no C2 C3 H3 120.2(12) no C4 C3 H3 116.4(12) no C13 C14 C9 120.55(15) no C13 C14 H14 120.6(11) no C9 C14 H14 118.8(11) no C6 C5 C4 110.26(14) no C6 C5 H5A 108.9(13) no C4 C5 H5A 110.4(12) no C6 C5 H5B 108.0(12) no C4 C5 H5B 108.7(11) no H5A C5 H5B 110.5(16) no loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance _geom_bond_publ_flag S1 C1 1.6821(15) no N1 C1 1.3342(19) no N1 C15 1.4662(19) no N1 C8 1.4868(18) no C16 C21 1.389(2) no C16 C17 1.391(2) no C16 C15 1.512(2) no C17 C18 1.393(2) no C17 H17 0.958(17) no C20 C19 1.384(3) no C20 C21 1.390(2) no C20 H20 0.96(2) no C18 C19 1.385(3) no C18 H18 1.00(2) no C9 C14 1.391(2) no C9 C10 1.391(2) no C9 C8 1.510(2) no C2 C3 1.331(2) no C2 C1 1.4908(19) no C2 C7 1.515(2) no C19 H19 0.96(2) no C15 H15A 0.953(19) no C15 H15B 1.021(18) no C10 C11 1.388(2) no C10 H10 0.984(18) no C11 C12 1.379(3) no C11 H11 0.981(19) no C21 H21 0.96(2) no C6 C5 1.518(3) no C6 C7 1.523(2) no C6 H6B 0.99(2) no C6 H6A 0.95(2) no C8 H8B 0.970(18) no C8 H8A 0.988(19) no C4 C3 1.506(2) no C4 C5 1.526(3) no C4 H4A 1.00(2) no C4 H4B 0.96(2) no C7 H7A 0.999(18) no C7 H7B 0.99(2) no C12 C13 1.388(2) no C12 H12 0.976(18) no C13 C14 1.385(2) no C13 H13 0.94(2) no C3 H3 1.02(2) no C14 H14 0.980(18) no C5 H5A 1.01(2) no C5 H5B 1.03(2) no loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion _geom_torsion_publ_flag C21 C16 C17 C18 -0.9(2) no C15 C16 C17 C18 176.87(14) no C16 C17 C18 C19 0.5(2) no C21 C20 C19 C18 -0.1(3) no C17 C18 C19 C20 0.0(3) no C1 N1 C15 C16 -112.01(15) no C8 N1 C15 C16 68.48(18) no C21 C16 C15 N1 -145.29(15) no C17 C16 C15 N1 37.0(2) no C14 C9 C10 C11 0.4(2) no C8 C9 C10 C11 179.81(14) no C9 C10 C11 C12 1.1(2) no C17 C16 C21 C20 0.8(2) no C15 C16 C21 C20 -177.01(15) no C19 C20 C21 C16 -0.3(3) no C1 N1 C8 C9 -62.2(2) no C15 N1 C8 C9 117.27(15) no C14 C9 C8 N1 -49.3(2) no C10 C9 C8 N1 131.23(15) no C3 C2 C7 C6 14.3(2) no C1 C2 C7 C6 -170.77(14) no C5 C6 C7 C2 -45.25(18) no C10 C11 C12 C13 -1.0(2) no C11 C12 C13 C14 -0.5(2) no C15 N1 C1 C2 179.33(14) no C8 N1 C1 C2 -1.2(2) no C15 N1 C1 S1 -1.1(2) no C8 N1 C1 S1 178.39(12) no C3 C2 C1 N1 -70.75(19) no C7 C2 C1 N1 114.16(15) no C3 C2 C1 S1 109.63(14) no C7 C2 C1 S1 -65.46(16) no C1 C2 C3 C4 -174.28(15) no C7 C2 C3 C4 0.4(3) no C5 C4 C3 C2 16.0(2) no C12 C13 C14 C9 1.9(2) no C10 C9 C14 C13 -1.9(2) no C8 C9 C14 C13 178.68(15) no C7 C6 C5 C4 62.94(18) no C3 C4 C5 C6 -46.56(19) no loop_ _cod_related_entry_id _cod_related_entry_database _cod_related_entry_code 1 ChemSpider 9155389