#------------------------------------------------------------------------------ #$Date: 2013-08-29 17:37:19 +0200 (Thu, 29 Aug 2013) $ #$Revision: 88064 $ #$URL: svn://www.crystallography.net/cod/cif/2/10/03/2100340.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2100340 loop_ _publ_author_name 'Hao, Xiang' 'Parkin, Sean' 'Brock, Carolyn Pratt' _publ_section_title ; The unusual phases of anhydrous and hydrated pinacol ; _journal_coeditor_code WS5034 _journal_issue 6 _journal_name_full 'Acta Crystallographica Section B' _journal_page_first 689 _journal_page_last 699 _journal_volume 61 _journal_year 2005 _chemical_formula_moiety 'C6 H14 O2' _chemical_formula_sum 'C6 H14 O2' _chemical_formula_weight 118.17 _chemical_melting_point 314.2 _chemical_name_common pinacol _chemical_name_systematic ; 2,3-dimethyl-2,3-butanediol ; _space_group_IT_number 15 _symmetry_cell_setting monoclinic _symmetry_space_group_name_Hall '-C 2yc' _symmetry_space_group_name_H-M 'C 1 2/c 1' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_creation_method SHELXL-97 _cell_angle_alpha 90.00 _cell_angle_beta 90.96(3) _cell_angle_gamma 90.00 _cell_formula_units_Z 16 _cell_length_a 16.360(3) _cell_length_b 16.219(3) _cell_length_c 10.942(2) _cell_measurement_reflns_used 2804 _cell_measurement_temperature 173(2) _cell_measurement_theta_max 27.48 _cell_measurement_theta_min 1.00 _cell_volume 2903.0(9) _computing_cell_refinement 'SCALEPACK (Otwinowski & Minor, 1997)' _computing_data_collection 'COLLECT (Nonius, 1998)' _computing_data_reduction 'DENZO-SMN (Otwinowski & Minor, 1997)' _computing_molecular_graphics 'XP in Siemens SHELXTL (Sheldrick, 1994)' _computing_publication_material ; SHELX97-2 (Sheldrick, 1997) and local procedures ; _computing_structure_refinement 'SHELXL-97 (Sheldrick, 1997)' _computing_structure_solution 'SHELXS-97 (Sheldrick, 1990)' _diffrn_ambient_temperature 173(2) _diffrn_detector_area_resol_mean 18 _diffrn_measured_fraction_theta_full 0.998 _diffrn_measured_fraction_theta_max 0.998 _diffrn_measurement_device_type 'Nonius KappaCCD diffractometer' _diffrn_measurement_method '\w scans at fixed \c = 55\%' _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0266 _diffrn_reflns_av_sigmaI/netI 0.0564 _diffrn_reflns_limit_h_max 21 _diffrn_reflns_limit_h_min -21 _diffrn_reflns_limit_k_max 14 _diffrn_reflns_limit_k_min -21 _diffrn_reflns_limit_l_max 14 _diffrn_reflns_limit_l_min -14 _diffrn_reflns_number 5431 _diffrn_reflns_theta_full 27.49 _diffrn_reflns_theta_max 27.49 _diffrn_reflns_theta_min 1.77 _diffrn_standards_decay_% <1 _exptl_absorpt_coefficient_mu 0.079 _exptl_absorpt_correction_T_max 0.9922 _exptl_absorpt_correction_T_min 0.9844 _exptl_absorpt_correction_type multi-scan _exptl_absorpt_process_details 'SCALEPACK (Otwinowski & Minor, 1997)' _exptl_crystal_colour colorless _exptl_crystal_density_diffrn 1.082 _exptl_crystal_density_method 'not measured' _exptl_crystal_description block _exptl_crystal_F_000 1056 _exptl_crystal_size_max 0.20 _exptl_crystal_size_mid 0.15 _exptl_crystal_size_min 0.10 _refine_diff_density_max 0.245 _refine_diff_density_min -0.194 _refine_ls_extinction_coef 0.0041(7) _refine_ls_extinction_expression Fc^*^=kFc[1+0.001xFc^2^\l^3^/sin(2\q)]^-1/4^ _refine_ls_extinction_method SHELXL _refine_ls_goodness_of_fit_ref 1.072 _refine_ls_hydrogen_treatment mixed _refine_ls_matrix_type full _refine_ls_number_parameters 170 _refine_ls_number_reflns 3333 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 1.072 _refine_ls_R_factor_all 0.0882 _refine_ls_R_factor_gt 0.0483 _refine_ls_shift/su_max 0.000 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w=1/[\s^2^(Fo^2^)+(0.0507P)^2^+0.8893P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.1105 _refine_ls_wR_factor_ref 0.1275 _reflns_number_gt 2173 _reflns_number_total 3333 _reflns_threshold_expression >2\s(I) _[local]_cod_data_source_file ws5034.cif _[local]_cod_data_source_block k01154 _[local]_cod_cif_authors_sg_H-M 'C 2/c' _cod_database_code 2100340 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, y, -z+1/2' 'x+1/2, y+1/2, z' '-x+1/2, y+1/2, -z+1/2' '-x, -y, -z' 'x, -y, z-1/2' '-x+1/2, -y+1/2, -z' 'x+1/2, -y+1/2, z-1/2' loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy _atom_site_disorder_assembly _atom_site_disorder_group _atom_site_type_symbol C1 0.45410(9) 0.40173(9) 0.23173(15) 0.0264(4) Uani d . 1 . . C C2 0.40691(10) 0.47252(11) 0.2899(2) 0.0441(5) Uani d . 1 . . C H2A 0.3501 0.4717 0.2600 0.066 Uiso calc R 1 . . H H2B 0.4323 0.5251 0.2681 0.066 Uiso calc R 1 . . H H2C 0.4081 0.4661 0.3790 0.066 Uiso calc R 1 . . H C3 0.44156(11) 0.40276(12) 0.09436(16) 0.0419(5) Uani d . 1 . . C H3A 0.4750 0.3595 0.0575 0.063 Uiso calc R 1 . . H H3B 0.4578 0.4566 0.0622 0.063 Uiso calc R 1 . . H H3C 0.3838 0.3928 0.0744 0.063 Uiso calc R 1 . . H O1 0.41874(6) 0.32727(7) 0.28109(11) 0.0285(3) Uani d . 1 . . O H11 0.4150(12) 0.2914(12) 0.2247(19) 0.049(6) Uiso d . 1 . . H C4 0.35651(9) 0.14506(10) -0.08927(14) 0.0282(4) Uani d . 1 . . C C5 0.42546(13) 0.19988(16) -0.13141(19) 0.0607(7) Uani d . 1 . . C H5A 0.4197 0.2096 -0.2195 0.091 Uiso calc R 1 . . H H5B 0.4780 0.1729 -0.1140 0.091 Uiso calc R 1 . . H H5C 0.4234 0.2527 -0.0880 0.091 Uiso calc R 1 . . H C6 0.35862(14) 0.06306(12) -0.15647(18) 0.0542(6) Uani d . 1 . . C H6A 0.3119 0.0294 -0.1323 0.081 Uiso calc R 1 . . H H6B 0.4095 0.0340 -0.1356 0.081 Uiso calc R 1 . . H H6C 0.3559 0.0729 -0.2448 0.081 Uiso calc R 1 . . H C7 0.35667(9) 0.13528(9) 0.05157(14) 0.0256(4) Uani d . 1 . . C C8 0.28163(10) 0.08893(11) 0.09577(16) 0.0343(4) Uani d . 1 . . C H8A 0.2830 0.0862 0.1853 0.051 Uiso calc R 1 . . H H8B 0.2816 0.0329 0.0621 0.051 Uiso calc R 1 . . H H8C 0.2320 0.1179 0.0683 0.051 Uiso calc R 1 . . H C9 0.43405(10) 0.09374(11) 0.09998(16) 0.0368(4) Uani d . 1 . . C H9A 0.4818 0.1260 0.0760 0.055 Uiso calc R 1 . . H H9B 0.4379 0.0380 0.0658 0.055 Uiso calc R 1 . . H H9C 0.4323 0.0905 0.1893 0.055 Uiso calc R 1 . . H O2 0.28053(7) 0.18513(7) -0.12021(12) 0.0334(3) Uani d . 1 . . O H21 0.2757(12) 0.1876(12) -0.196(2) 0.053(6) Uiso d . 1 . . H O3 0.35727(7) 0.21581(7) 0.10653(10) 0.0312(3) Uani d . 1 . . O H31 0.3133(14) 0.2391(13) 0.090(2) 0.063(7) Uiso d . 1 . . H C10 0.24748(9) 0.29785(10) 0.49399(14) 0.0260(4) Uani d . 1 . . C C11 0.31077(10) 0.34099(10) 0.57561(15) 0.0350(4) Uani d . 1 . . C H11A 0.3658 0.3263 0.5492 0.052 Uiso calc R 1 . . H H11B 0.3037 0.3236 0.6605 0.052 Uiso calc R 1 . . H H11C 0.3034 0.4008 0.5695 0.052 Uiso calc R 1 . . H C12 0.16219(10) 0.32945(11) 0.52355(17) 0.0366(4) Uani d . 1 . . C H12A 0.1608 0.3896 0.5147 0.055 Uiso calc R 1 . . H H12B 0.1490 0.3145 0.6077 0.055 Uiso calc R 1 . . H H12C 0.1221 0.3046 0.4672 0.055 Uiso calc R 1 . . H O4 0.26063(7) 0.32027(7) 0.36847(10) 0.0301(3) Uani d . 1 . . O H41 0.3141(13) 0.3219(11) 0.3509(18) 0.048(6) Uiso d . 1 . . H loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 C1 0.0223(8) 0.0268(8) 0.0299(9) -0.0021(6) -0.0023(6) 0.0056(7) C2 0.0279(9) 0.0341(10) 0.0704(15) 0.0050(7) -0.0002(9) -0.0003(9) C3 0.0418(11) 0.0503(12) 0.0330(10) -0.0151(8) -0.0124(8) 0.0149(9) O1 0.0291(6) 0.0300(7) 0.0264(7) -0.0062(5) 0.0032(5) -0.0003(5) C4 0.0218(8) 0.0385(9) 0.0242(9) 0.0066(7) -0.0007(6) -0.0011(7) C5 0.0436(12) 0.1069(19) 0.0318(11) -0.0213(11) 0.0057(9) 0.0112(11) C6 0.0773(15) 0.0527(13) 0.0321(11) 0.0309(11) -0.0113(10) -0.0109(9) C7 0.0250(8) 0.0295(9) 0.0222(8) 0.0025(6) -0.0019(6) -0.0032(7) C8 0.0325(9) 0.0404(10) 0.0300(10) -0.0029(7) -0.0020(7) 0.0013(8) C9 0.0312(9) 0.0475(11) 0.0314(10) 0.0091(8) -0.0063(7) 0.0006(8) O2 0.0337(7) 0.0440(7) 0.0225(7) 0.0135(5) -0.0034(5) 0.0007(5) O3 0.0302(6) 0.0343(7) 0.0290(7) 0.0019(5) -0.0058(5) -0.0078(5) C10 0.0250(8) 0.0335(9) 0.0194(8) -0.0003(6) 0.0030(6) 0.0004(7) C11 0.0388(10) 0.0387(10) 0.0272(9) -0.0058(8) -0.0020(7) -0.0047(8) C12 0.0325(10) 0.0376(10) 0.0399(11) 0.0067(7) 0.0082(8) 0.0017(8) O4 0.0251(6) 0.0431(7) 0.0223(6) -0.0011(5) 0.0015(5) 0.0076(5) loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_site_symmetry_2 _geom_bond_distance _geom_bond_publ_flag C1 O1 . 1.4474(19) no C1 C3 . 1.514(2) no C1 C2 . 1.529(2) no C1 C1 2_655 1.548(3) no C2 H2A . 0.9800 no C2 H2B . 0.9800 no C2 H2C . 0.9800 no C3 H3A . 0.9800 no C3 H3B . 0.9800 no C3 H3C . 0.9800 no O1 H11 . 0.85(2) no C4 O2 . 1.4381(18) no C4 C5 . 1.514(3) no C4 C6 . 1.520(2) no C4 C7 . 1.549(2) no C5 H5A . 0.9800 no C5 H5B . 0.9800 no C5 H5C . 0.9800 no C6 H6A . 0.9800 no C6 H6B . 0.9800 no C6 H6C . 0.9800 no C7 O3 . 1.4378(19) no C7 C9 . 1.521(2) no C7 C8 . 1.525(2) no C8 H8A . 0.9800 no C8 H8B . 0.9800 no C8 H8C . 0.9800 no C9 H9A . 0.9800 no C9 H9B . 0.9800 no C9 H9C . 0.9800 no O2 H21 . 0.84(2) no O3 H31 . 0.83(2) no C10 O4 . 1.4405(18) no C10 C11 . 1.526(2) no C10 C12 . 1.526(2) no C10 C10 7_556 1.560(3) no C11 H11A . 0.9800 no C11 H11B . 0.9800 no C11 H11C . 0.9800 no C12 H12A . 0.9800 no C12 H12B . 0.9800 no C12 H12C . 0.9800 no O4 H41 . 0.90(2) no loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle_site_symmetry_3 _geom_angle _geom_angle_publ_flag O1 C1 C3 . 109.35(13) no O1 C1 C2 . 105.28(13) no C3 C1 C2 . 110.15(14) no O1 C1 C1 2_655 107.20(10) no C3 C1 C1 2_655 111.79(17) no C2 C1 C1 2_655 112.77(12) no C1 C2 H2A . 109.5 no C1 C2 H2B . 109.5 no H2A C2 H2B . 109.5 no C1 C2 H2C . 109.5 no H2A C2 H2C . 109.5 no H2B C2 H2C . 109.5 no C1 C3 H3A . 109.5 no C1 C3 H3B . 109.5 no H3A C3 H3B . 109.5 no C1 C3 H3C . 109.5 no H3A C3 H3C . 109.5 no H3B C3 H3C . 109.5 no C1 O1 H11 . 108.9(14) no O2 C4 C5 . 107.96(15) no O2 C4 C6 . 107.94(13) no C5 C4 C6 . 110.08(17) no O2 C4 C7 . 105.52(13) no C5 C4 C7 . 111.97(14) no C6 C4 C7 . 113.07(14) no C4 C5 H5A . 109.5 no C4 C5 H5B . 109.5 no H5A C5 H5B . 109.5 no C4 C5 H5C . 109.5 no H5A C5 H5C . 109.5 no H5B C5 H5C . 109.5 no C4 C6 H6A . 109.5 no C4 C6 H6B . 109.5 no H6A C6 H6B . 109.5 no C4 C6 H6C . 109.5 no H6A C6 H6C . 109.5 no H6B C6 H6C . 109.5 no O3 C7 C9 . 104.88(12) no O3 C7 C8 . 108.36(13) no C9 C7 C8 . 109.93(14) no O3 C7 C4 . 108.84(12) no C9 C7 C4 . 112.28(13) no C8 C7 C4 . 112.21(13) no C7 C8 H8A . 109.5 no C7 C8 H8B . 109.5 no H8A C8 H8B . 109.5 no C7 C8 H8C . 109.5 no H8A C8 H8C . 109.5 no H8B C8 H8C . 109.5 no C7 C9 H9A . 109.5 no C7 C9 H9B . 109.5 no H9A C9 H9B . 109.5 no C7 C9 H9C . 109.5 no H9A C9 H9C . 109.5 no H9B C9 H9C . 109.5 no C4 O2 H21 . 108.8(14) no C7 O3 H31 . 109.0(15) no O4 C10 C11 . 109.37(13) no O4 C10 C12 . 105.60(13) no C11 C10 C12 . 109.62(14) no O4 C10 C10 7_556 108.85(15) no C11 C10 C10 7_556 111.88(16) no C12 C10 C10 7_556 111.31(16) no C10 C11 H11A . 109.5 no C10 C11 H11B . 109.5 no H11A C11 H11B . 109.5 no C10 C11 H11C . 109.5 no H11A C11 H11C . 109.5 no H11B C11 H11C . 109.5 no C10 C12 H12A . 109.5 no C10 C12 H12B . 109.5 no H12A C12 H12B . 109.5 no C10 C12 H12C . 109.5 no H12A C12 H12C . 109.5 no H12B C12 H12C . 109.5 no C10 O4 H41 . 111.9(12) no loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion _geom_torsion_publ_flag O2 C4 C7 O3 -64.08(15) no C5 C4 C7 O3 53.12(18) no C6 C4 C7 O3 178.17(14) no O2 C4 C7 C9 -179.74(13) no C5 C4 C7 C9 -62.5(2) no C6 C4 C7 C9 62.50(18) no O2 C4 C7 C8 55.85(17) no C5 C4 C7 C8 173.04(16) no C6 C4 C7 C8 -61.91(18) no _cod_database_fobs_code 2100340