#------------------------------------------------------------------------------ #$Date: 2023-12-07 12:49:50 +0100 (Thu, 07 Dec 2023) $ #$Revision: 288137 $ #$URL: svn://www.crystallography.net/cod/cif/2/02/29/2022926.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2022926 loop_ _publ_author_name 'Suyunov, Jabbor R.' 'Turaev, Khayit Kh' 'Alimnazarov, Bekmurod Kh' 'Nazarov, Yusuf E.' 'Mengnorov, Islombek J.' 'Ibragimov, Bakhtiyar T.' 'Ashurov, Jamshid M.' _publ_section_title ; Synthesis, crystal structure and Hirshfeld surface analysis of di-aqua-bis-(o-phenyl-enedi-amine-κ2N,N')nickel(II) naphthalene-1,5-di-sulfonate. ; _journal_coeditor_code WM5701 _journal_issue 'Pt 11' _journal_name_full 'Acta crystallographica. Section E, Crystallographic communications' _journal_page_first 1083 _journal_page_last 1087 _journal_paper_doi 10.1107/S2056989023009350 _journal_volume 79 _journal_year 2023 _chemical_formula_iupac '[Ni (C6 H8 N2)2 (H2 O1)2] (C10 H6 O6 S2)' _chemical_formula_moiety 'C12 H20 N4 Ni O2 2+, C10 H6 O6 S2 2-' _chemical_formula_sum 'C22 H26 N4 Ni O8 S2' _chemical_formula_weight 597.30 _chemical_name_systematic ; Diaquabis(o-phenylenediamine-\k^2^N,N')nickel(II) naphthalene-1,5-disulfonate ; _space_group_crystal_system monoclinic _space_group_IT_number 14 _space_group_name_Hall '-P 2yn' _space_group_name_H-M_alt 'P 1 21/n 1' _atom_sites_solution_hydrogens mixed _atom_sites_solution_primary iterative _audit_creation_method ; Olex2 1.5-beta (compiled 2023.08.24 svn.re1ec1418 for OlexSys, GUI svn.r6817) ; _cell_angle_alpha 90 _cell_angle_beta 111.554(2) _cell_angle_gamma 90 _cell_formula_units_Z 2 _cell_length_a 12.7613(3) _cell_length_b 7.70540(10) _cell_length_c 13.4641(3) _cell_measurement_reflns_used 6737 _cell_measurement_temperature 563.15 _cell_measurement_theta_max 71.0430 _cell_measurement_theta_min 4.0690 _cell_volume 1231.36(5) _computing_cell_refinement ; CrysAlisPro (Rigaku OD, 2023) ; _computing_data_collection ; CrysAlisPro (Rigaku OD, 2023) ; _computing_data_reduction ; CrysAlisPro (Rigaku OD, 2023) ; _computing_molecular_graphics ; Olex2 (Dolomanov et al., 2009) ; _computing_publication_material ; Olex2 (Dolomanov et al., 2009) ; _computing_structure_refinement ; SHELXL (Sheldrick, 2015b) ; _computing_structure_solution ; SHELXT (Sheldrick, 2015a) ; _diffrn_ambient_temperature 563.15 _diffrn_detector 'Hybrid Pixel Array Detector' _diffrn_detector_area_resol_mean 10.0000 _diffrn_measured_fraction_theta_full 1.000 _diffrn_measured_fraction_theta_max 0.993 _diffrn_measurement_device 'four-circle diffractometer' _diffrn_measurement_device_type 'XtaLAB Synergy, Single source at home/near, HyPix3000' _diffrn_measurement_method '\w scans' _diffrn_radiation_monochromator mirror _diffrn_radiation_probe x-ray _diffrn_radiation_type 'Cu K\a' _diffrn_radiation_wavelength 1.54184 _diffrn_reflns_av_R_equivalents 0.0382 _diffrn_reflns_av_unetI/netI 0.0279 _diffrn_reflns_limit_h_max 15 _diffrn_reflns_limit_h_min -15 _diffrn_reflns_limit_k_max 9 _diffrn_reflns_limit_k_min -9 _diffrn_reflns_limit_l_max 16 _diffrn_reflns_limit_l_min -14 _diffrn_reflns_number 11384 _diffrn_reflns_theta_full 67.684 _diffrn_reflns_theta_max 71.257 _diffrn_reflns_theta_min 4.083 _diffrn_source 'micro-focus sealed X-ray tube' _exptl_absorpt_coefficient_mu 3.219 _exptl_absorpt_correction_T_max 1.00000 _exptl_absorpt_correction_T_min 0.57293 _exptl_absorpt_correction_type multi-scan _exptl_absorpt_process_details ; (CrysAlisPro; Rigaku OD, 2023) ; _exptl_crystal_colour 'light green' _exptl_crystal_density_diffrn 1.611 _exptl_crystal_description block _exptl_crystal_F_000 620 _exptl_crystal_size_max 0.22 _exptl_crystal_size_mid 0.18 _exptl_crystal_size_min 0.14 _refine_diff_density_max 0.502 _refine_diff_density_min -0.488 _refine_ls_extinction_coef 0.0006(2) _refine_ls_extinction_expression Fc^*^=kFc[1+0.001xFc^2^\l^3^/sin(2\q)]^-1/4^ _refine_ls_extinction_method ; SHELXL (Sheldrick, 2015a) ; _refine_ls_goodness_of_fit_ref 1.044 _refine_ls_hydrogen_treatment mixed _refine_ls_matrix_type full _refine_ls_number_parameters 194 _refine_ls_number_reflns 2380 _refine_ls_number_restraints 6 _refine_ls_restrained_S_all 1.043 _refine_ls_R_factor_all 0.0391 _refine_ls_R_factor_gt 0.0360 _refine_ls_shift/su_max 0.001 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'w=1/[\s^2^(Fo^2^)+(0.0480P)^2^+0.8302P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.0948 _refine_ls_wR_factor_ref 0.0971 _reflns_number_gt 2152 _reflns_number_total 2380 _reflns_threshold_expression 'I > 2\s(I)' _cod_data_source_file wm5701sup1.cif _cod_data_source_block I _cod_depositor_comments 'Adding full bibliography for 2022926.cif.' _cod_original_sg_symbol_H-M 'P 21/n' _cod_database_code 2022926 _cod_database_fobs_code 2022926 _shelx_space_group_comment ; The symmetry employed for this shelxl refinement is uniquely defined by the following loop, which should always be used as a source of symmetry information in preference to the above space-group names. They are only intended as comments. ; _shelx_estimated_absorpt_t_min 0.538 _shelx_estimated_absorpt_t_max 0.661 loop_ _space_group_symop_operation_xyz 'x, y, z' '-x+1/2, y+1/2, -z+1/2' '-x, -y, -z' 'x-1/2, -y-1/2, z-1/2' loop_ _atom_site_type_symbol _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_calc_flag _atom_site_occupancy _atom_site_disorder_assembly _atom_site_disorder_group Ni Ni1 1.000000 0.500000 0.500000 0.02713(17) Uani d 1 . . S S1 0.69836(5) 0.87424(8) 0.39745(4) 0.03779(18) Uani d 1 . . O O1W 0.83329(14) 0.4677(2) 0.38469(14) 0.0412(4) Uani d 1 . . O O1 0.73435(15) 0.7254(2) 0.46852(14) 0.0488(5) Uani d 1 . . N N1 0.99045(16) 0.2387(2) 0.53808(16) 0.0330(4) Uani d 1 . . O O3 0.62288(17) 0.8217(3) 0.29283(14) 0.0574(5) Uani d 1 . . N N2 0.93181(15) 0.5408(2) 0.61643(14) 0.0298(4) Uani d 1 . . O O2 0.79217(17) 0.9758(3) 0.39332(19) 0.0636(6) Uani d 1 . . C C11 0.47191(16) 1.0579(3) 0.52339(16) 0.0276(4) Uani d 1 . . C C6 0.91414(17) 0.3765(3) 0.66003(16) 0.0297(4) Uani d 1 . . C C1 0.94563(18) 0.2253(3) 0.62287(17) 0.0319(5) Uani d 1 . . C C7 0.62041(18) 1.0098(3) 0.45202(17) 0.0313(5) Uani d 1 . . C C10 0.50918(19) 1.2316(3) 0.54324(18) 0.0350(5) Uani d 1 . . H H10 0.473811 1.306841 0.575033 0.042 Uiso calc 1 . . C C5 0.86718(19) 0.3671(3) 0.73833(18) 0.0381(5) Uani d 1 . . H H5 0.846130 0.468202 0.763862 0.046 Uiso calc 1 . . C C8 0.65220(18) 1.1796(3) 0.47028(19) 0.0385(5) Uani d 1 . . H H8 0.711068 1.221455 0.451995 0.046 Uiso calc 1 . . C C9 0.5960(2) 1.2909(3) 0.5166(2) 0.0405(5) Uani d 1 . . H H9 0.618250 1.406318 0.529312 0.049 Uiso calc 1 . . C C2 0.9316(2) 0.0661(3) 0.6643(2) 0.0446(6) Uani d 1 . . H H2 0.953980 -0.035050 0.639981 0.054 Uiso calc 1 . . C C4 0.8518(2) 0.2078(4) 0.7781(2) 0.0474(6) Uani d 1 . . H H4 0.819333 0.201834 0.829604 0.057 Uiso calc 1 . . C C3 0.8845(2) 0.0572(4) 0.7417(2) 0.0510(6) Uani d 1 . . H H3 0.874888 -0.049782 0.769179 0.061 Uiso calc 1 . . H H2A 0.8674(14) 0.596(3) 0.585(2) 0.049(8) Uiso d 1 . . H H2B 0.9775(17) 0.607(3) 0.6689(15) 0.038(7) Uiso d 1 . . H H1A 0.946(2) 0.188(4) 0.4786(15) 0.062(9) Uiso d 1 . . H H1B 1.0556(14) 0.182(3) 0.561(2) 0.052(8) Uiso d 1 . . H H1WA 0.822(3) 0.447(5) 0.3199(11) 0.072(11) Uiso d 1 . . H H1WB 0.787(2) 0.546(4) 0.386(3) 0.085(12) Uiso d 1 . . loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 Ni1 0.0287(3) 0.0260(3) 0.0306(3) 0.00340(18) 0.0155(2) 0.00141(19) S1 0.0365(3) 0.0456(3) 0.0367(3) 0.0168(2) 0.0198(2) 0.0050(2) O1W 0.0343(9) 0.0495(10) 0.0395(9) 0.0062(7) 0.0133(7) -0.0073(8) O1 0.0481(10) 0.0549(11) 0.0464(10) 0.0299(8) 0.0208(8) 0.0131(8) N1 0.0353(10) 0.0280(9) 0.0418(11) 0.0046(8) 0.0212(9) 0.0015(8) O3 0.0633(12) 0.0736(14) 0.0348(9) 0.0262(10) 0.0175(9) -0.0035(9) N2 0.0291(9) 0.0302(9) 0.0316(9) 0.0041(7) 0.0131(8) -0.0002(7) O2 0.0550(12) 0.0644(13) 0.0938(17) 0.0090(10) 0.0538(12) 0.0030(11) C11 0.0259(9) 0.0302(10) 0.0258(9) 0.0070(8) 0.0085(8) 0.0004(8) C6 0.0246(10) 0.0356(11) 0.0280(10) 0.0001(8) 0.0088(8) 0.0024(8) C1 0.0294(10) 0.0331(11) 0.0347(11) 0.0014(8) 0.0135(9) 0.0040(9) C7 0.0279(10) 0.0368(11) 0.0300(10) 0.0089(8) 0.0117(9) 0.0014(8) C10 0.0348(11) 0.0331(11) 0.0374(11) 0.0067(9) 0.0137(9) -0.0044(9) C5 0.0349(11) 0.0492(14) 0.0331(11) -0.0016(10) 0.0158(9) -0.0019(10) C8 0.0286(11) 0.0411(12) 0.0475(13) 0.0015(9) 0.0160(10) 0.0034(10) C9 0.0386(12) 0.0301(11) 0.0516(14) -0.0005(9) 0.0153(11) -0.0049(10) C2 0.0493(14) 0.0354(12) 0.0517(15) 0.0012(11) 0.0217(12) 0.0085(11) C4 0.0461(14) 0.0645(17) 0.0366(12) -0.0081(12) 0.0209(11) 0.0059(12) C3 0.0573(16) 0.0501(15) 0.0487(15) -0.0050(13) 0.0231(13) 0.0153(12) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0181 0.0091 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0311 0.0180 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' Ni Ni -3.0029 0.5091 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0492 0.0322 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' S S 0.3331 0.5567 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle_site_symmetry_1 _geom_angle_site_symmetry_3 _geom_angle _geom_angle_publ_flag O1W Ni1 O1W . 3_766 180.0 ? N1 Ni1 O1W 3_766 3_766 86.20(8) ? N1 Ni1 O1W 3_766 . 93.80(8) ? N1 Ni1 O1W . 3_766 93.80(8) ? N1 Ni1 O1W . . 86.20(8) ? N1 Ni1 N1 . 3_766 180.0 ? N2 Ni1 O1W 3_766 . 90.88(7) ? N2 Ni1 O1W 3_766 3_766 89.12(7) ? N2 Ni1 O1W . . 89.12(7) ? N2 Ni1 O1W . 3_766 90.88(7) ? N2 Ni1 N1 3_766 3_766 83.26(7) ? N2 Ni1 N1 . 3_766 96.74(7) ? N2 Ni1 N1 . . 83.26(7) ? N2 Ni1 N1 3_766 . 96.74(7) ? N2 Ni1 N2 . 3_766 180.00(10) ? O1 S1 C7 . . 106.30(10) ? O3 S1 O1 . . 110.91(13) ? O3 S1 O2 . . 112.29(13) ? O3 S1 C7 . . 107.13(10) ? O2 S1 O1 . . 112.67(12) ? O2 S1 C7 . . 107.12(11) ? Ni1 O1W H1WA . . 121(2) ? Ni1 O1W H1WB . . 115(3) ? H1WA O1W H1WB . . 107(3) ? Ni1 N1 H1A . . 106(2) ? Ni1 N1 H1B . . 115(2) ? C1 N1 Ni1 . . 109.60(13) ? C1 N1 H1A . . 112(2) ? C1 N1 H1B . . 106.1(19) ? H1A N1 H1B . . 108(3) ? Ni1 N2 H2A . . 107.0(18) ? Ni1 N2 H2B . . 110.6(16) ? C6 N2 Ni1 . . 110.14(13) ? C6 N2 H2A . . 110.8(19) ? C6 N2 H2B . . 109.3(17) ? H2A N2 H2B . . 109(3) ? C11 C11 C7 3_676 3_676 117.6(2) ? C10 C11 C11 . 3_676 119.1(2) ? C10 C11 C7 . 3_676 123.28(19) ? C1 C6 N2 . . 118.72(18) ? C1 C6 C5 . . 119.5(2) ? C5 C6 N2 . . 121.8(2) ? C6 C1 N1 . . 118.23(19) ? C6 C1 C2 . . 120.1(2) ? C2 C1 N1 . . 121.6(2) ? C11 C7 S1 3_676 . 120.95(16) ? C8 C7 S1 . . 117.60(17) ? C8 C7 C11 . 3_676 121.45(19) ? C11 C10 H10 . . 119.4 ? C9 C10 C11 . . 121.2(2) ? C9 C10 H10 . . 119.4 ? C6 C5 H5 . . 119.9 ? C4 C5 C6 . . 120.1(2) ? C4 C5 H5 . . 119.9 ? C7 C8 H8 . . 120.0 ? C7 C8 C9 . . 120.0(2) ? C9 C8 H8 . . 120.0 ? C10 C9 C8 . . 120.7(2) ? C10 C9 H9 . . 119.7 ? C8 C9 H9 . . 119.7 ? C1 C2 H2 . . 119.9 ? C3 C2 C1 . . 120.2(2) ? C3 C2 H2 . . 119.9 ? C5 C4 H4 . . 119.9 ? C5 C4 C3 . . 120.2(2) ? C3 C4 H4 . . 119.9 ? C2 C3 H3 . . 120.1 ? C4 C3 C2 . . 119.8(2) ? C4 C3 H3 . . 120.1 ? loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_site_symmetry_2 _geom_bond_distance _geom_bond_publ_flag Ni1 O1W 3_766 2.1381(17) ? Ni1 O1W . 2.1381(17) ? Ni1 N1 . 2.0924(18) ? Ni1 N1 3_766 2.0924(18) ? Ni1 N2 3_766 2.0776(17) ? Ni1 N2 . 2.0775(17) ? S1 O1 . 1.4558(18) ? S1 O3 . 1.4419(19) ? S1 O2 . 1.448(2) ? S1 C7 . 1.777(2) ? O1W H1WA . 0.846(10) ? O1W H1WB . 0.850(10) ? N1 C1 . 1.456(3) ? N1 H1A . 0.886(10) ? N1 H1B . 0.889(10) ? N2 C6 . 1.447(3) ? N2 H2A . 0.882(10) ? N2 H2B . 0.891(10) ? C11 C11 3_676 1.427(4) ? C11 C7 3_676 1.434(3) ? C11 C10 . 1.413(3) ? C6 C1 . 1.385(3) ? C6 C5 . 1.393(3) ? C1 C2 . 1.386(3) ? C7 C8 . 1.365(3) ? C10 H10 . 0.9300 ? C10 C9 . 1.363(3) ? C5 H5 . 0.9300 ? C5 C4 . 1.382(4) ? C8 H8 . 0.9300 ? C8 C9 . 1.403(3) ? C9 H9 . 0.9300 ? C2 H2 . 0.9300 ? C2 C3 . 1.383(4) ? C4 H4 . 0.9300 ? C4 C3 . 1.383(4) ? C3 H3 . 0.9300 ? loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_site_symmetry_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA _geom_hbond_publ_flag N1 H1A O2 1_545 0.886(10) 2.484(19) 3.268(3) 148(3) yes N1 H1B O2 3_766 0.889(10) 2.179(11) 3.066(3) 175(3) yes N2 H2A O1 . 0.882(10) 2.096(14) 2.941(2) 160(3) yes N2 H2B O3 4_676 0.891(10) 2.063(13) 2.908(3) 158(2) yes O1W H1WA O3 2_645 0.846(10) 2.12(2) 2.876(3) 148(3) yes O1W H1WB O1 . 0.850(10) 2.04(2) 2.803(2) 150(3) yes loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion_site_symmetry_1 _geom_torsion_site_symmetry_2 _geom_torsion_site_symmetry_3 _geom_torsion_site_symmetry_4 _geom_torsion _geom_torsion_publ_flag Ni1 N1 C1 C6 . . . . 2.3(2) ? Ni1 N1 C1 C2 . . . . -179.29(18) ? Ni1 N2 C6 C1 . . . . 1.6(2) ? Ni1 N2 C6 C5 . . . . -178.80(17) ? S1 C7 C8 C9 . . . . -177.84(18) ? O1 S1 C7 C11 . . . 3_676 -53.0(2) ? O1 S1 C7 C8 . . . . 126.48(19) ? N1 C1 C2 C3 . . . . -177.3(2) ? O3 S1 C7 C11 . . . 3_676 65.6(2) ? O3 S1 C7 C8 . . . . -114.9(2) ? N2 C6 C1 N1 . . . . -2.7(3) ? N2 C6 C1 C2 . . . . 178.9(2) ? N2 C6 C5 C4 . . . . -179.9(2) ? O2 S1 C7 C11 . . . 3_676 -173.73(18) ? O2 S1 C7 C8 . . . . 5.8(2) ? C11 C11 C10 C9 3_676 . . . 1.3(4) ? C11 C7 C8 C9 3_676 . . . 1.7(3) ? C11 C10 C9 C8 . . . . -1.1(4) ? C6 C1 C2 C3 . . . . 1.0(4) ? C6 C5 C4 C3 . . . . 1.0(4) ? C1 C6 C5 C4 . . . . -0.3(3) ? C1 C2 C3 C4 . . . . -0.3(4) ? C7 C11 C10 C9 3_676 . . . -178.7(2) ? C7 C8 C9 C10 . . . . -0.4(4) ? C5 C6 C1 N1 . . . . 177.67(19) ? C5 C6 C1 C2 . . . . -0.8(3) ? C5 C4 C3 C2 . . . . -0.7(4) ?