#------------------------------------------------------------------------------ #$Date: 2011-09-10 05:16:28 +0200 (Sat, 10 Sep 2011) $ #$Revision: 25271 $ #$URL: svn://www.crystallography.net/cod/cif/2/2009097.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2009097 loop_ _publ_author_name 'Freytag, M.' 'Jones, P. G.' _publ_section_title ; Hydrogen bonding in two piperidinium derivatives ; _journal_issue 11 _journal_name_full 'Acta Crystallographica Section C' _journal_page_first 1874 _journal_page_last 1877 _journal_volume 55 _journal_year 1999 _chemical_formula_moiety 'C6 H14 N 1+, C7 H12 N O2 1-, H2 O' _chemical_formula_sum 'C13 H28 N2 O3' _chemical_formula_weight 260.37 _chemical_name_systematic ; 4-Methylpiperidinium 4-Methylpyridine-N-carboxylate Monohydrate ; _space_group_IT_number 61 _symmetry_cell_setting orthorhombic _symmetry_space_group_name_Hall '-P 2ac 2ab' _symmetry_space_group_name_H-M 'P b c a' _audit_creation_method SHELXL-97 _cell_angle_alpha 90.00 _cell_angle_beta 90.00 _cell_angle_gamma 90.00 _cell_formula_units_Z 8 _cell_length_a 9.1378(10) _cell_length_b 10.9924(14) _cell_length_c 30.580(3) _cell_measurement_reflns_used 45 _cell_measurement_temperature 173(2) _cell_measurement_theta_max 11.9 _cell_measurement_theta_min 4.8 _cell_volume 3071.6(6) _computing_cell_refinement XSCANS _computing_data_collection 'XSCANS (Fait, 1991)' _computing_data_reduction XSCANS _computing_molecular_graphics 'XP (Siemens, 1994b)' _computing_publication_material SHELXL97 _computing_structure_refinement 'SHELXL97 (Sheldrick, 1997a)' _computing_structure_solution 'SHELXS97 (Sheldrick, 1997b)' _diffrn_ambient_temperature 173(2) _diffrn_measured_fraction_theta_full 0.997 _diffrn_measured_fraction_theta_max 0.997 _diffrn_measurement_device_type 'Siemens P4' _diffrn_measurement_method \w _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.029 _diffrn_reflns_av_sigmaI/netI 0.0767 _diffrn_reflns_limit_h_max 0 _diffrn_reflns_limit_h_min -10 _diffrn_reflns_limit_k_max 2 _diffrn_reflns_limit_k_min -13 _diffrn_reflns_limit_l_max 0 _diffrn_reflns_limit_l_min -36 _diffrn_reflns_number 3094 _diffrn_reflns_theta_full 25.00 _diffrn_reflns_theta_max 25 _diffrn_reflns_theta_min 3.19 _diffrn_standards_decay_% 0 _diffrn_standards_interval_count 247 _diffrn_standards_number 3 _exptl_absorpt_coefficient_mu 0.079 _exptl_absorpt_correction_type none _exptl_crystal_colour colourless _exptl_crystal_density_diffrn 1.126 _exptl_crystal_density_method 'not measured' _exptl_crystal_description cone _exptl_crystal_F_000 1152 _exptl_crystal_size_max 0.4 _exptl_crystal_size_mid 0.3 _exptl_crystal_size_min 0.3 _refine_diff_density_max 0.12 _refine_diff_density_min -0.13 _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 0.797 _refine_ls_hydrogen_treatment mixed _refine_ls_matrix_type full _refine_ls_number_parameters 181 _refine_ls_number_reflns 2694 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 0.797 _refine_ls_R_factor_all 0.088 _refine_ls_R_factor_gt 0.038 _refine_ls_shift/su_max <0.001 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w = 1/[\s^2^(Fo^2^)+(0.0346P)^2^] where P = (Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_ref 0.078 _reflns_number_gt 1486 _reflns_number_total 2694 _reflns_threshold_expression I>2\s(I) _[local]_cod_data_source_file bm1355.cif _[local]_cod_data_source_block secondo _cod_depositor_comments ; The following automatic conversions were performed: '_geom_torsion_publ_flag' value 'Y' changed to 'y' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29 (19 times). Automatic conversion script Id: cif_fix_values 1715 2011-07-08 13:25:40Z adriana ; _cod_database_code 2009097 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x+1/2, -y, z+1/2' '-x, y+1/2, -z+1/2' 'x+1/2, -y+1/2, -z' '-x, -y, -z' 'x-1/2, y, -z-1/2' 'x, -y-1/2, z-1/2' '-x-1/2, y-1/2, z' loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy _atom_site_type_symbol N2 0.45401(17) 0.78859(15) 0.27488(5) 0.0305(4) Uani d . 1 N H1 0.442(2) 0.8071(18) 0.2409(7) 0.066(7) Uiso d . 1 H H2 0.514(2) 0.7175(18) 0.2797(6) 0.053(6) Uiso d . 1 H C11 0.5309(2) 0.89423(16) 0.29484(5) 0.0350(5) Uani d . 1 C H11A 0.4759 0.9697 0.2884 0.042 Uiso calc R 1 H H11B 0.6296 0.9021 0.2818 0.042 Uiso calc R 1 H C12 0.5447(2) 0.87875(17) 0.34388(5) 0.0350(5) Uani d . 1 C H12A 0.5914 0.9521 0.3565 0.042 Uiso calc R 1 H H12B 0.6087 0.8082 0.3502 0.042 Uiso calc R 1 H C13 0.3968(2) 0.85914(18) 0.36547(5) 0.0350(5) Uani d . 1 C H13 0.3354 0.9328 0.3600 0.042 Uiso calc R 1 H C14 0.3221(2) 0.7506(2) 0.34420(6) 0.0411(5) Uani d . 1 C H14A 0.2234 0.7402 0.3570 0.049 Uiso calc R 1 H H14B 0.3792 0.6761 0.3504 0.049 Uiso calc R 1 H C15 0.30843(19) 0.7672(2) 0.29486(6) 0.0414(5) Uani d . 1 C H15A 0.2638 0.6936 0.2818 0.050 Uiso calc R 1 H H15B 0.2436 0.8372 0.2886 0.050 Uiso calc R 1 H C16 0.4114(2) 0.8429(2) 0.41474(6) 0.0507(6) Uani d . 1 C H16A 0.4700 0.7702 0.4209 0.061 Uiso calc R 1 H H16B 0.3140 0.8337 0.4277 0.061 Uiso calc R 1 H H16C 0.4597 0.9144 0.4273 0.061 Uiso calc R 1 H O3 0.65133(16) 0.59730(14) 0.28722(5) 0.0430(4) Uani d . 1 O H1W 0.624(2) 0.520(2) 0.2969(6) 0.073(8) Uiso d . 1 H H2W 0.734(3) 0.624(2) 0.3016(7) 0.080(8) Uiso d . 1 H O1 0.59863(15) 0.17202(11) 0.32675(4) 0.0422(4) Uani d . 1 O O2 0.56788(14) 0.36700(11) 0.30788(4) 0.0390(4) Uani d . 1 O N1 0.55769(17) 0.31223(13) 0.37923(4) 0.0328(4) Uani d . 1 N C1 0.5230(2) 0.43512(16) 0.39358(5) 0.0357(5) Uani d . 1 C H1A 0.4199 0.4384 0.4035 0.043 Uiso calc R 1 H H1B 0.5341 0.4921 0.3687 0.043 Uiso calc R 1 H C2 0.6228(2) 0.47397(16) 0.43060(5) 0.0347(5) Uani d . 1 C H2A 0.5905 0.5543 0.4416 0.042 Uiso calc R 1 H H2B 0.7236 0.4832 0.4192 0.042 Uiso calc R 1 H C3 0.6240(2) 0.38343(17) 0.46830(5) 0.0357(5) Uani d . 1 C H3 0.5241 0.3825 0.4816 0.043 Uiso calc R 1 H C4 0.6559(2) 0.25681(18) 0.45082(6) 0.0381(5) Uani d . 1 C H4A 0.7583 0.2536 0.4404 0.046 Uiso calc R 1 H H4B 0.6454 0.1971 0.4749 0.046 Uiso calc R 1 H C5 0.5543(2) 0.22174(17) 0.41369(6) 0.0376(5) Uani d . 1 C H5A 0.5843 0.1419 0.4017 0.045 Uiso calc R 1 H H5B 0.4531 0.2139 0.4250 0.045 Uiso calc R 1 H C6 0.7329(2) 0.4210(2) 0.50373(6) 0.0532(6) Uani d . 1 C H6A 0.8324 0.4188 0.4918 0.064 Uiso calc R 1 H H6B 0.7259 0.3646 0.5285 0.064 Uiso calc R 1 H H6C 0.7104 0.5037 0.5137 0.064 Uiso calc R 1 H C7 0.57578(19) 0.28168(18) 0.33604(6) 0.0303(5) Uani d . 1 C loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 N2 0.0308(9) 0.0317(10) 0.0289(10) 0.0016(8) -0.0024(7) -0.0006(8) C11 0.0408(11) 0.0298(11) 0.0344(11) -0.0058(10) 0.0053(9) -0.0014(9) C12 0.0396(11) 0.0329(11) 0.0325(10) -0.0035(10) -0.0006(9) -0.0052(9) C13 0.0361(11) 0.0421(12) 0.0266(10) 0.0094(10) 0.0035(9) 0.0019(9) C14 0.0277(10) 0.0580(14) 0.0374(12) -0.0045(12) 0.0011(9) 0.0085(10) C15 0.0309(11) 0.0550(14) 0.0383(12) -0.0042(11) -0.0056(9) -0.0016(10) C16 0.0464(13) 0.0719(16) 0.0339(11) 0.0080(13) 0.0028(10) 0.0005(11) O3 0.0408(9) 0.0291(8) 0.0589(9) -0.0029(8) -0.0084(8) 0.0080(8) O1 0.0534(9) 0.0282(8) 0.0450(8) -0.0016(7) 0.0101(7) -0.0096(7) O2 0.0594(9) 0.0297(7) 0.0279(7) -0.0094(7) -0.0016(7) 0.0009(6) N1 0.0504(10) 0.0214(8) 0.0265(8) 0.0046(8) 0.0000(7) -0.0003(7) C1 0.0482(12) 0.0279(10) 0.0309(10) 0.0079(10) -0.0002(9) 0.0014(9) C2 0.0415(12) 0.0292(11) 0.0334(10) 0.0002(10) 0.0054(9) -0.0072(9) C3 0.0352(11) 0.0431(13) 0.0287(10) -0.0004(11) 0.0011(9) -0.0019(10) C4 0.0435(11) 0.0377(12) 0.0331(10) 0.0040(12) -0.0005(10) 0.0067(9) C5 0.0492(12) 0.0287(11) 0.0349(10) -0.0015(11) 0.0012(10) 0.0039(9) C6 0.0561(14) 0.0617(16) 0.0419(12) -0.0007(13) -0.0089(11) -0.0062(12) C7 0.0241(10) 0.0333(12) 0.0334(11) -0.0070(10) 0.0006(8) -0.0024(10) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle _geom_angle_publ_flag C15 N2 C11 112.24(15) y N2 C11 C12 110.96(15) ? C11 C12 C13 111.85(15) ? C12 C13 C14 108.96(15) ? C12 C13 C16 111.63(16) ? C14 C13 C16 111.76(17) ? C13 C14 C15 111.49(17) ? N2 C15 C14 110.69(15) ? C7 N1 C5 122.29(15) y C7 N1 C1 122.91(14) y C5 N1 C1 114.40(14) y N1 C1 C2 110.83(15) ? C1 C2 C3 112.68(15) ? C4 C3 C2 109.51(14) ? C4 C3 C6 111.85(16) ? C2 C3 C6 111.39(16) ? C5 C4 C3 112.27(15) ? N1 C5 C4 110.90(16) ? O1 C7 O2 124.23(17) y O1 C7 N1 118.19(17) y O2 C7 N1 117.58(16) y loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance _geom_bond_publ_flag N2 C15 1.483(2) y N2 C11 1.488(2) y C11 C12 1.515(2) ? C12 C13 1.520(2) ? C13 C14 1.521(3) ? C13 C16 1.523(2) ? C14 C15 1.525(2) ? O1 C7 1.256(2) y O2 C7 1.275(2) y N1 C7 1.373(2) y N1 C5 1.449(2) y N1 C1 1.455(2) y C1 C2 1.516(2) ? C2 C3 1.523(2) ? C3 C4 1.519(2) ? C3 C6 1.528(2) ? C4 C5 1.517(2) ? loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_site_symmetry_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA _geom_hbond_publ_flag O3 H1W O2 . 0.94(2) 1.79(2) 2.718(2) 172(2) y O3 H2W O1 8_765 0.92(2) 1.79(2) 2.712(2) 177(2) y N2 H1 O2 3_655 1.06(2) 1.63(2) 2.681(2) 167(2) y N2 H2 O3 . 0.97(2) 1.84(2) 2.796(2) 172(2) y C15 H15A O3 6_556 0.99 2.58 3.442(2) 146 y C12 H12A O1 1_565 0.99 2.58 3.303(2) 129 y loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion _geom_torsion_publ_flag C15 N2 C11 C12 55.8(2) y N2 C11 C12 C13 -55.9(2) y C11 C12 C13 C14 55.8(2) y C11 C12 C13 C16 179.68(16) y C12 C13 C14 C15 -55.9(2) y C16 C13 C14 C15 -179.73(16) y C11 N2 C15 C14 -55.9(2) y C13 C14 C15 N2 56.5(2) y C7 N1 C1 C2 -131.71(17) y C5 N1 C1 C2 55.4(2) y N1 C1 C2 C3 -53.1(2) y C1 C2 C3 C4 52.1(2) y C1 C2 C3 C6 176.33(15) y C2 C3 C4 C5 -52.5(2) y C6 C3 C4 C5 -176.44(16) y C7 N1 C5 C4 131.01(17) y C1 N1 C5 C4 -56.0(2) y C3 C4 C5 N1 54.3(2) y C5 N1 C7 O1 -4.3(3) y C1 N1 C7 O1 -176.63(17) ? C5 N1 C7 O2 175.59(16) ? C1 N1 C7 O2 3.2(3) ?