#------------------------------------------------------------------------------ #$Date: 2011-09-10 05:16:28 +0200 (Sat, 10 Sep 2011) $ #$Revision: 25271 $ #$URL: svn://www.crystallography.net/cod/cif/2/2009096.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2009096 loop_ _publ_author_name 'Freytag, M.' 'Jones, P. G.' _publ_section_title ; Hydrogen bonding in two piperidinium derivatives ; _journal_issue 11 _journal_name_full 'Acta Crystallographica Section C' _journal_page_first 1874 _journal_page_last 1877 _journal_volume 55 _journal_year 1999 _chemical_formula_moiety 'C5 H12 N O 1+, I 1-' _chemical_formula_sum 'C5 H12 I N O' _chemical_formula_weight 229.06 _chemical_name_systematic ; 4-Hydroxypiperidinium iodide ; _space_group_IT_number 14 _symmetry_cell_setting monoclinic _symmetry_space_group_name_Hall '-P 2yn' _symmetry_space_group_name_H-M 'P 1 21/n 1' _audit_creation_method SHELXL-97 _cell_angle_alpha 90.00 _cell_angle_beta 97.480(10) _cell_angle_gamma 90.00 _cell_formula_units_Z 4 _cell_length_a 7.7939(8) _cell_length_b 12.3957(14) _cell_length_c 7.9780(10) _cell_measurement_reflns_used 62 _cell_measurement_temperature 173(2) _cell_measurement_theta_max 12.5 _cell_measurement_theta_min 3.0 _cell_volume 764.20(15) _computing_cell_refinement XSCANS _computing_data_collection 'XSCANS (Fait, 1991)' _computing_data_reduction XSCANS _computing_molecular_graphics 'XP (Siemens, 1994b)' _computing_publication_material SHELXL97 _computing_structure_refinement 'SHELXL97 (Sheldrick, 1997a)' _computing_structure_solution 'SHELXS97 (Sheldrick, 1997b)' _diffrn_ambient_temperature 173(2) _diffrn_measured_fraction_theta_full 1.000 _diffrn_measured_fraction_theta_max 1.000 _diffrn_measurement_device_type 'Siemens P4' _diffrn_measurement_method \w _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.023 _diffrn_reflns_av_sigmaI/netI 0.0173 _diffrn_reflns_limit_h_max 10 _diffrn_reflns_limit_h_min -4 _diffrn_reflns_limit_k_max 13 _diffrn_reflns_limit_k_min -16 _diffrn_reflns_limit_l_max 10 _diffrn_reflns_limit_l_min -10 _diffrn_reflns_number 5555 _diffrn_reflns_theta_full 27.50 _diffrn_reflns_theta_max 27.5 _diffrn_reflns_theta_min 3.05 _diffrn_standards_decay_% 0 _diffrn_standards_interval_count 247 _diffrn_standards_number 3 _exptl_absorpt_coefficient_mu 4.107 _exptl_absorpt_correction_T_max 0.996 _exptl_absorpt_correction_T_min 0.702 _exptl_absorpt_correction_type '\y scan' _exptl_absorpt_process_details '(XEMP; Siemens, 1994a)' _exptl_crystal_colour colourless _exptl_crystal_density_diffrn 1.991 _exptl_crystal_density_method 'not measured' _exptl_crystal_description prism _exptl_crystal_F_000 440 _exptl_crystal_size_max 0.4 _exptl_crystal_size_mid 0.3 _exptl_crystal_size_min 0.2 _refine_diff_density_max 0.50 _refine_diff_density_min -0.47 _refine_ls_extinction_coef 0.0357(8) _refine_ls_extinction_method 'SHELXL97 (Sheldrick, 1997a)' _refine_ls_goodness_of_fit_ref 1.071 _refine_ls_hydrogen_treatment mixed _refine_ls_matrix_type full _refine_ls_number_parameters 86 _refine_ls_number_reflns 1750 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 1.071 _refine_ls_R_factor_all 0.017 _refine_ls_R_factor_gt 0.014 _refine_ls_shift/su_max 0.001 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w = 1/[\s^2^(Fo^2^)+(0.0193P)^2^+0.1398P] where P = (Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_ref 0.035 _reflns_number_gt 1595 _reflns_number_total 1750 _reflns_threshold_expression I>2\sa(I) _[local]_cod_data_source_file bm1355.cif _[local]_cod_data_source_block primo _[local]_cod_cif_authors_sg_H-M 'P 21/n' _cod_depositor_comments ; The following automatic conversions were performed: '_geom_torsion_publ_flag' value 'Y' changed to 'y' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29 (8 times). Automatic conversion script Id: cif_fix_values 1715 2011-07-08 13:25:40Z adriana ; _cod_database_code 2009096 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x+1/2, y+1/2, -z+1/2' '-x, -y, -z' 'x-1/2, -y-1/2, z-1/2' loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy _atom_site_type_symbol I 0.667721(15) 0.017017(10) 0.263222(14) 0.02190(6) Uani d . 1 I N 0.2496(2) 0.13039(13) 0.1412(2) 0.0238(3) Uani d . 1 N H1' 0.345(3) 0.0935(19) 0.169(3) 0.025(6) Uiso d . 1 H H2' 0.185(4) 0.093(2) 0.068(3) 0.042(7) Uiso d . 1 H O 0.40215(18) 0.40194(10) 0.44136(17) 0.0217(3) Uani d . 1 O H3' 0.354(3) 0.4108(19) 0.514(3) 0.029(7) Uiso d . 1 H C1 0.1603(3) 0.14806(17) 0.2945(2) 0.0283(4) Uani d . 1 C H1A 0.1461 0.0782 0.3513 0.034 Uiso calc R 1 H H1B 0.0439 0.1789 0.2601 0.034 Uiso calc R 1 H C2 0.2658(3) 0.22443(15) 0.4160(2) 0.0222(4) Uani d . 1 C H2A 0.3781 0.1904 0.4580 0.027 Uiso calc R 1 H H2B 0.2034 0.2383 0.5142 0.027 Uiso calc R 1 H C3 0.2976(2) 0.33061(14) 0.3299(2) 0.0172(3) Uani d . 1 C H3 0.1842 0.3660 0.2905 0.021 Uiso calc R 1 H C4 0.3932(2) 0.30883(14) 0.1788(2) 0.0196(4) Uani d . 1 C H4A 0.4128 0.3777 0.1213 0.023 Uiso calc R 1 H H4B 0.5074 0.2763 0.2180 0.023 Uiso calc R 1 H C5 0.2890(3) 0.23283(15) 0.0550(2) 0.0237(4) Uani d . 1 C H5A 0.1795 0.2682 0.0076 0.028 Uiso calc R 1 H H5B 0.3554 0.2164 -0.0395 0.028 Uiso calc R 1 H loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 I 0.02013(8) 0.02256(9) 0.02322(8) 0.00091(5) 0.00359(5) 0.00099(4) N 0.0212(9) 0.0195(8) 0.0297(8) -0.0018(7) -0.0002(7) -0.0065(6) O 0.0229(7) 0.0199(6) 0.0222(6) -0.0025(5) 0.0029(6) -0.0062(5) C1 0.0245(10) 0.0278(10) 0.0337(10) -0.0091(8) 0.0077(9) -0.0039(8) C2 0.0220(10) 0.0240(9) 0.0215(8) -0.0057(8) 0.0058(7) 0.0001(6) C3 0.0137(8) 0.0170(8) 0.0201(8) 0.0013(7) 0.0000(7) -0.0021(6) C4 0.0211(9) 0.0181(8) 0.0196(8) -0.0033(7) 0.0025(7) -0.0003(6) C5 0.0257(10) 0.0239(9) 0.0205(8) -0.0004(8) -0.0006(8) -0.0025(7) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' I I -0.4742 1.8119 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle _geom_angle_publ_flag C5 N C1 113.32(15) y N C1 C2 109.94(16) ? C1 C2 C3 110.99(15) ? O C3 C2 111.55(14) ? O C3 C4 107.70(14) ? C2 C3 C4 109.26(14) ? C5 C4 C3 110.44(15) ? N C5 C4 110.60(14) ? loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance _geom_bond_publ_flag N C5 1.495(2) y N C1 1.500(2) y O C3 1.431(2) y C1 C2 1.518(3) ? C2 C3 1.520(2) ? C3 C4 1.521(2) ? C4 C5 1.521(2) ? loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_site_symmetry_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA _geom_hbond_publ_flag N H1' I . 0.88(2) 2.70(3) 3.566(2) 169(2) y N H2' O 4_565 0.85(3) 2.30(3) 2.985(2) 137(2) y N H2' O 2_545 0.85(3) 2.46(3) 3.106(2) 133(2) y N H2' I 3_655 0.85(3) 3.31(3) 3.835(2) 122(2) y O H3' I 4_566 0.74(2) 2.76(3) 3.4880(10) 169(2) y C3 H3 I 2 1.00 3.30 4.283(2) 167 y C5 H5A I 4_565 0.99 3.29 3.919(2) 123 y C5 H5B I 3_655 0.99 3.39 4.047(2) 125 y loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion _geom_torsion_publ_flag C5 N C1 C2 -54.8(2) y N C1 C2 C3 56.5(2) y C1 C2 C3 O -177.95(15) y C1 C2 C3 C4 -59.0(2) y O C3 C4 C5 179.78(14) y C2 C3 C4 C5 58.45(19) y C1 N C5 C4 54.9(2) y C3 C4 C5 N -56.2(2) y