#------------------------------------------------------------------------------ #$Date: 2011-09-10 05:16:28 +0200 (Sat, 10 Sep 2011) $ #$Revision: 25271 $ #$URL: svn://www.crystallography.net/cod/cif/2/2009073.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2009073 loop_ _publ_author_name 'Low, J. N.' 'Godino, M. L.' 'L\'opez, R.' 'P\'erez, A.' 'Melguizo, M.' 'Cobo, J.' _publ_section_title ; N-(6-Amino-3,4-dihydro-3-methyl-5-nitroso-4-oxopyrimidin-2-yl)methionine ; _journal_issue 10 _journal_name_full 'Acta Crystallographica Section C' _journal_page_first 1727 _journal_page_last 1730 _journal_volume 55 _journal_year 1999 _chemical_formula_moiety 'C10 H15 N5 O4 S ' _chemical_formula_sum 'C10 H15 N5 O4 S' _chemical_formula_weight 301.33 _chemical_name_systematic ; N-(6-amino-3,4-dihydro-3-methyl-5-nitroso-4-oxopyrimidin-2-yl) methionine ; _space_group_IT_number 19 _symmetry_cell_setting orthorhombic _symmetry_space_group_name_Hall 'P 2ac 2ab' _symmetry_space_group_name_H-M 'P 21 21 21' _cell_angle_alpha 90.00 _cell_angle_beta 90.00 _cell_angle_gamma 90.00 _cell_formula_units_Z 4 _cell_length_a 9.0165(4) _cell_length_b 11.3057(3) _cell_length_c 13.4155(6) _cell_measurement_reflns_used all _cell_measurement_temperature 150(2) _cell_measurement_theta_max 26.27 _cell_measurement_theta_min 2.35 _cell_volume 1367.55(9) _computing_cell_refinement COLLECT _computing_data_collection 'COLLECT (Enraf-Nonius, 1998)' _computing_data_reduction 'COLLECT and DATRD2 in NRCVAX94 (Gabe et al., 1989)' _computing_molecular_graphics 'PLATON (Spek, 1998) and PLUTON (Spek, 1995)' _computing_publication_material 'NRCVAX94, SHELX97, WordPerfect and PREP8 (Ferguson, 19??)' _computing_structure_refinement 'NRCVAX94 and SHELXL97' _computing_structure_solution 'SOLVER in NRCVAX' _diffrn_ambient_temperature 150.0(10) _diffrn_measured_fraction_theta_full 0.999 _diffrn_measured_fraction_theta_max 0.999 _diffrn_measurement_device_type 'Kappa CCD area detector' _diffrn_measurement_method \f+\w _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'X-ray tube' _diffrn_radiation_type 'Mo K\a' _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.051 _diffrn_reflns_av_sigmaI/netI 0.048 _diffrn_reflns_limit_h_max 11 _diffrn_reflns_limit_h_min -11 _diffrn_reflns_limit_k_max 14 _diffrn_reflns_limit_k_min -14 _diffrn_reflns_limit_l_max 16 _diffrn_reflns_limit_l_min -14 _diffrn_reflns_number 10372 _diffrn_reflns_theta_full 26.27 _diffrn_reflns_theta_max 26.27 _diffrn_reflns_theta_min 2.35 _exptl_absorpt_coefficient_mu 0.260 _exptl_absorpt_correction_T_max 1.0000 _exptl_absorpt_correction_T_min 1.0000 _exptl_absorpt_correction_type none _exptl_crystal_colour orange _exptl_crystal_density_diffrn 1.464 _exptl_crystal_density_meas 'not measured' _exptl_crystal_description needle _exptl_crystal_F_000 632 _exptl_crystal_size_max 0.25 _exptl_crystal_size_mid 0.15 _exptl_crystal_size_min 0.10 _refine_diff_density_max 0.521 _refine_diff_density_min -0.369 _refine_ls_abs_structure_details 'Flack (1983)' _refine_ls_abs_structure_Flack -0.07(13) _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 1.208 _refine_ls_hydrogen_treatment constr _refine_ls_matrix_type full _refine_ls_number_parameters 184 _refine_ls_number_reflns 2778 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 1.208 _refine_ls_R_factor_all 0.061 _refine_ls_R_factor_gt 0.047 _refine_ls_shift/su_max <0.001 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_scheme 'calc w = 1/[\s^2^(Fo^2^)+(0.0679P)^2^] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_wR_factor_ref 0.128 _reflns_number_gt 2331 _reflns_number_total 2778 _reflns_threshold_expression I>2\s(I) _[local]_cod_data_source_file sk1287.cif _[local]_cod_data_source_block HL _cod_database_code 2009073 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' 'x+1/2, -y+1/2, -z' '-x, y+1/2, -z+1/2' '-x+1/2, -y, z+1/2' loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy _atom_site_type_symbol N1 0.2739(3) 0.04658(17) 0.03525(18) 0.0227(5) Uani d . 1 N C2 0.3681(3) 0.0895(2) 0.1005(2) 0.0195(6) Uani d . 1 C N2 0.3641(2) 0.20587(16) 0.11709(17) 0.0214(5) Uani d . 1 N C21 0.2658(3) 0.2805(2) 0.0579(2) 0.0238(6) Uani d . 1 C C22 0.3342(3) 0.4034(2) 0.0507(2) 0.0218(6) Uani d . 1 C O21 0.2520(3) 0.47330(16) -0.00295(19) 0.0402(6) Uani d . 1 O O22 0.4503(2) 0.42879(16) 0.09130(16) 0.0282(5) Uani d . 1 O C23 0.1071(3) 0.2824(2) 0.0985(2) 0.0303(7) Uani d . 1 C C24 0.0891(3) 0.3499(3) 0.1950(3) 0.0399(8) Uani d . 1 C S2 -0.09168(9) 0.32937(8) 0.25138(8) 0.0496(3) Uani d . 1 S C25 -0.0622(5) 0.1884(4) 0.3029(3) 0.0565(10) Uani d . 1 C N3 0.4725(2) 0.02325(18) 0.15143(19) 0.0222(5) Uani d . 1 N C3 0.5843(3) 0.0824(2) 0.2139(2) 0.0273(6) Uani d . 1 C C4 0.4820(3) -0.0992(2) 0.1365(2) 0.0215(6) Uani d . 1 C O4 0.5725(2) -0.15844(16) 0.18275(15) 0.0276(5) Uani d . 1 O C5 0.3787(3) -0.1486(2) 0.0630(2) 0.0212(6) Uani d . 1 C N5 0.3858(2) -0.26479(18) 0.05386(19) 0.0245(5) Uani d . 1 N O5 0.2997(2) -0.31171(14) -0.01405(15) 0.0277(5) Uani d . 1 O C6 0.2765(3) -0.0684(2) 0.0130(2) 0.0212(6) Uani d . 1 C N6 0.1807(3) -0.10606(17) -0.05300(19) 0.0261(6) Uani d . 1 N H2 0.4193 0.2367 0.1625 0.026 Uiso calc R 1 H H21 0.2622 0.2474 -0.0096 0.029 Uiso calc R 1 H H21A 0.2909 0.5388 -0.0061 0.060 Uiso calc R 1 H H23A 0.0427 0.3174 0.0486 0.036 Uiso calc R 1 H H23B 0.0746 0.2015 0.1089 0.036 Uiso calc R 1 H H24A 0.1044 0.4335 0.1823 0.048 Uiso calc R 1 H H24B 0.1648 0.3242 0.2416 0.048 Uiso calc R 1 H H25A -0.1500 0.1633 0.3374 0.085 Uiso calc R 1 H H25B 0.0193 0.1917 0.3488 0.085 Uiso calc R 1 H H25C -0.0398 0.1333 0.2506 0.085 Uiso calc R 1 H H3A 0.6506 0.0244 0.2412 0.041 Uiso calc R 1 H H3B 0.5357 0.1238 0.2671 0.041 Uiso calc R 1 H H3C 0.6394 0.1375 0.1741 0.041 Uiso calc R 1 H H6A 0.1196 -0.0573 -0.0800 0.031 Uiso calc R 1 H H6B 0.1789 -0.1796 -0.0694 0.031 Uiso calc R 1 H loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 N1 0.0253(12) 0.0123(10) 0.0306(13) 0.0017(8) -0.0039(11) 0.0005(9) C2 0.0229(14) 0.0134(12) 0.0222(14) -0.0011(9) 0.0017(12) 0.0008(10) N2 0.0252(12) 0.0139(10) 0.0252(13) 0.0006(8) -0.0055(10) -0.0004(9) C21 0.0278(15) 0.0141(12) 0.0297(15) -0.0004(10) -0.0070(13) -0.0015(11) C22 0.0287(16) 0.0099(11) 0.0267(15) 0.0032(10) 0.0001(13) -0.0026(11) O21 0.0479(14) 0.0145(9) 0.0583(16) -0.0063(9) -0.0236(12) 0.0071(10) O22 0.0295(12) 0.0180(9) 0.0370(12) -0.0033(8) -0.0006(9) 0.0019(8) C23 0.0251(15) 0.0207(13) 0.0452(18) -0.0025(11) -0.0048(14) 0.0001(12) C24 0.0286(17) 0.0353(17) 0.056(2) -0.0071(13) 0.0070(16) -0.0150(15) S2 0.0339(5) 0.0487(5) 0.0664(7) 0.0030(4) 0.0125(5) -0.0064(5) C25 0.053(2) 0.066(2) 0.051(2) -0.005(2) 0.005(2) 0.0056(19) N3 0.0225(12) 0.0159(10) 0.0283(14) -0.0013(9) -0.0025(10) 0.0011(9) C3 0.0308(16) 0.0202(13) 0.0308(16) 0.0015(12) -0.0107(13) 0.0006(11) C4 0.0234(14) 0.0145(12) 0.0264(16) 0.0025(10) 0.0020(12) 0.0021(11) O4 0.0296(11) 0.0201(9) 0.0330(12) 0.0035(8) -0.0065(9) 0.0000(8) C5 0.0211(14) 0.0158(13) 0.0266(15) -0.0013(9) -0.0002(12) 0.0030(10) N5 0.0266(13) 0.0153(11) 0.0317(13) 0.0009(9) -0.0003(11) 0.0001(9) O5 0.0344(11) 0.0140(9) 0.0348(12) -0.0017(8) -0.0078(9) -0.0028(8) C6 0.0210(14) 0.0165(12) 0.0263(15) 0.0019(10) 0.0012(12) 0.0007(11) N6 0.0293(13) 0.0099(10) 0.0390(15) 0.0030(9) -0.0105(12) -0.0007(10) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' S S 0.1246 0.1234 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle _geom_angle_publ_flag C2 N1 C6 119.9(2) n N1 C2 N2 117.3(2) n N1 C2 N3 124.7(2) n N2 C2 N3 118.0(2) n C2 N2 C21 119.7(2) n N2 C21 C22 108.4(2) n N2 C21 C23 112.5(2) n C22 C21 C23 112.8(2) n O22 C22 O21 126.5(2) n O22 C22 C21 122.5(2) n O21 C22 C21 111.0(2) n C24 C23 C21 114.3(2) n C23 C24 S2 112.9(2) n C25 S2 C24 98.28(18) n C2 N3 C4 120.4(2) n C2 N3 C3 120.1(2) n C4 N3 C3 119.2(2) n O4 C4 N3 120.6(2) n O4 C4 C5 123.7(2) n N3 C4 C5 115.7(2) n N5 C5 C6 127.3(2) n N5 C5 C4 114.2(2) n C6 C5 C4 118.3(2) n O5 N5 C5 116.0(2) n N6 C6 N1 117.2(2) n N6 C6 C5 121.8(2) n N1 C6 C5 121.0(2) n loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance _geom_bond_publ_flag N1 C2 1.313(4) n N1 C6 1.334(3) n C2 N2 1.335(3) n C2 N3 1.384(3) n N2 C21 1.459(3) n C21 C22 1.523(3) n C21 C23 1.531(4) n C22 O22 1.214(3) n C22 O21 1.301(3) n C23 C24 1.512(5) n C24 S2 1.812(3) n S2 C25 1.757(4) n N3 C4 1.401(3) n N3 C3 1.471(3) n C4 O4 1.224(3) n C4 C5 1.467(4) n C5 N5 1.321(3) n C5 C6 1.456(4) n N5 O5 1.309(3) n C6 N6 1.308(4) n loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_site_symmetry_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA _geom_hbond_publ_flag N2 H2 O4 3_655 0.86 2.39 3.145(3) 146.5 y O21 H21A O5 1_565 0.82 1.70 2.473(2) 157.4 y N6 H6A O22 2_455 0.86 2.11 2.932(3) 159.1 y N6 H6B O5 1_555 0.86 1.99 2.613(3) 128.3 y N6 H6B O4 2_445 0.86 2.57 3.327(3) 148.0 y loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion _geom_torsion_publ_flag C6 N1 C2 N2 177.6(2) n C6 N1 C2 N3 -1.1(4) n N1 C2 N2 C21 -4.7(4) n N3 C2 N2 C21 174.0(2) n C2 N2 C21 C22 -151.1(2) n C2 N2 C21 C23 83.5(3) n N2 C21 C22 O22 -1.3(4) n C23 C21 C22 O22 124.0(3) n N2 C21 C22 O21 178.9(2) n C23 C21 C22 O21 -55.9(3) n N2 C21 C23 C24 71.5(3) n C22 C21 C23 C24 -51.5(3) n C21 C23 C24 S2 -170.2(2) n C23 C24 S2 C25 77.8(3) n N1 C2 N3 C4 -1.1(4) n N2 C2 N3 C4 -179.7(2) n N1 C2 N3 C3 172.7(3) n N2 C2 N3 C3 -5.9(4) n C2 N3 C4 O4 -178.7(3) n C3 N3 C4 O4 7.5(4) n C2 N3 C4 C5 1.7(4) n C3 N3 C4 C5 -172.2(2) n O4 C4 C5 N5 3.2(4) n N3 C4 C5 N5 -177.2(2) n O4 C4 C5 C6 -179.9(3) n N3 C4 C5 C6 -0.3(4) n C6 C5 N5 O5 6.3(4) n C4 C5 N5 O5 -177.2(2) n C2 N1 C6 N6 -179.6(3) n C2 N1 C6 C5 2.5(4) n N5 C5 C6 N6 -3.3(4) n C4 C5 C6 N6 -179.6(2) n N5 C5 C6 N1 174.6(3) n C4 C5 C6 N1 -1.8(4) n