#------------------------------------------------------------------------------ #$Date: 2011-09-10 05:16:28 +0200 (Sat, 10 Sep 2011) $ #$Revision: 25271 $ #$URL: svn://www.crystallography.net/cod/cif/2/2008870.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2008870 loop_ _publ_author_name 'McKee, V.' 'Nelson, J.' _publ_section_title ; 1,4,7,10,13,16,21,24-Octaazabicyclo[8.8.8]hexacosa-4,6,13,15,21,23-hexaene pentahydrate ; _journal_issue 9 _journal_name_full 'Acta Crystallographica Section C' _journal_page_first 1494 _journal_page_last 1496 _journal_volume 55 _journal_year 1999 _chemical_formula_iupac 'C18 H30 N8 , 5H2 O' _chemical_formula_sum 'C18 H40 N8 O5' _chemical_formula_weight 448.58 _chemical_name_systematic ; 1,4,7,10,13,16,21,24-Octaazabicyclo[8.8.8]hexacosa-4,6,13,15,21,23-hexaene pentahydrate ; _space_group_IT_number 9 _symmetry_cell_setting monoclinic _symmetry_space_group_name_Hall 'C -2yc' _symmetry_space_group_name_H-M 'C 1 c 1' _audit_creation_method SHELXL-97 _cell_angle_alpha 90.00 _cell_angle_beta 122.532(6) _cell_angle_gamma 90.00 _cell_formula_units_Z 4 _cell_length_a 22.3117(14) _cell_length_b 8.2925(6) _cell_length_c 16.1711(18) _cell_measurement_reflns_used 34 _cell_measurement_temperature 153(2) _cell_measurement_theta_max 12.47 _cell_measurement_theta_min 5.45 _cell_volume 2522.5(4) _computing_cell_refinement XSCANS _computing_data_collection 'XSCANS (Siemens, 1994)' _computing_data_reduction 'SHELXTL (Sheldrick, 1990a)' _computing_molecular_graphics SHELXTL _computing_publication_material SHELXL97 _computing_structure_refinement 'SHELXL97 (Sheldrick, 1997)' _computing_structure_solution 'SHELXS97 (Sheldrick, 1990b)' _diffrn_ambient_temperature 153(2) _diffrn_measured_fraction_theta_full 1.000 _diffrn_measured_fraction_theta_max 1.000 _diffrn_measurement_device_type 'Siemens P4' _diffrn_measurement_method '\w scans' _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.015 _diffrn_reflns_av_sigmaI/netI 0.021 _diffrn_reflns_limit_h_max 26 _diffrn_reflns_limit_h_min 0 _diffrn_reflns_limit_k_max 1 _diffrn_reflns_limit_k_min -9 _diffrn_reflns_limit_l_max 16 _diffrn_reflns_limit_l_min -19 _diffrn_reflns_number 2603 _diffrn_reflns_theta_full 25.00 _diffrn_reflns_theta_max 25 _diffrn_reflns_theta_min 2.17 _diffrn_standards_decay_% 0 _diffrn_standards_interval_count 97 _diffrn_standards_number 3 _exptl_absorpt_coefficient_mu 0.087 _exptl_absorpt_correction_type none _exptl_crystal_colour colourless _exptl_crystal_density_diffrn 1.181 _exptl_crystal_density_method 'not measured' _exptl_crystal_description block _exptl_crystal_F_000 976 _exptl_crystal_size_max 0.60 _exptl_crystal_size_mid 0.58 _exptl_crystal_size_min 0.42 _refine_diff_density_max 0.14 _refine_diff_density_min -0.12 _refine_ls_abs_structure_details 'Flack (1983)' _refine_ls_abs_structure_Flack 0.1(12) _refine_ls_extinction_coef 0.0052(4) _refine_ls_extinction_method 'SHELXL97 (Sheldrick, 1997)' _refine_ls_goodness_of_fit_ref 1.052 _refine_ls_hydrogen_treatment mixed _refine_ls_matrix_type full _refine_ls_number_parameters 311 _refine_ls_number_reflns 2273 _refine_ls_number_restraints 2 _refine_ls_restrained_S_all 1.052 _refine_ls_R_factor_all 0.036 _refine_ls_R_factor_gt 0.029 _refine_ls_shift/su_max <0.001 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w = 1/[\s^2^(Fo^2^)+(0.0351P)^2^+0.6765P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_ref 0.068 _reflns_number_gt 2074 _reflns_number_total 2273 _reflns_threshold_expression I>2\s(I) _[local]_cod_data_source_file bm1339.cif _[local]_cod_data_source_block tlgt _[local]_cod_cif_authors_sg_H-M Cc _cod_depositor_comments ; The following automatic conversions were performed: '_symmetry_cell_setting' value 'Monoclinic' changed to 'monoclinic' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. Automatic conversion script Id: cif_fix_values 1715 2011-07-08 13:25:40Z adriana ; _cod_database_code 2008870 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' 'x, -y, z+1/2' 'x+1/2, y+1/2, z' 'x+1/2, -y+1/2, z+1/2' loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy _atom_site_type_symbol N1 -0.16337(10) -0.1370(2) 0.29803(14) 0.0248(5) Uani d . 1 N C11 -0.19079(13) -0.2691(3) 0.22715(19) 0.0287(6) Uani d . 1 C H11A -0.2182 -0.2240 0.1600 0.034 Uiso calc R 1 H H11B -0.2235 -0.3355 0.2366 0.034 Uiso calc R 1 H C12 -0.13168(13) -0.3756(3) 0.23753(19) 0.0302(6) Uani d . 1 C H12A -0.0991 -0.4052 0.3073 0.036 Uiso calc R 1 H H12B -0.1524 -0.4762 0.1996 0.036 Uiso calc R 1 H N11 -0.09196(11) -0.2935(3) 0.20241(14) 0.0277(5) Uani d . 1 N C13 -0.02451(13) -0.3013(3) 0.25430(18) 0.0260(5) Uani d . 1 C H13 -0.0015 -0.3544 0.3160 0.031 Uiso calc R 1 H C14 0.01792(14) -0.2289(3) 0.21954(18) 0.0277(6) Uani d . 1 C H14 -0.0046 -0.1640 0.1622 0.033 Uiso calc R 1 H N12 0.08425(10) -0.2523(3) 0.26532(14) 0.0265(5) Uani d . 1 N C15 0.12302(13) -0.1791(3) 0.22545(19) 0.0315(6) Uani d . 1 C H15A 0.0900 -0.1142 0.1668 0.038 Uiso calc R 1 H H15B 0.1436 -0.2646 0.2053 0.038 Uiso calc R 1 H C16 0.18194(13) -0.0721(3) 0.3022(2) 0.0305(6) Uani d . 1 C H16A 0.2136 -0.1368 0.3616 0.037 Uiso calc R 1 H H16B 0.2106 -0.0311 0.2766 0.037 Uiso calc R 1 H N2 0.15403(10) 0.0649(2) 0.32891(15) 0.0271(5) Uani d . 1 N C21 -0.21262(13) -0.0013(3) 0.26611(19) 0.0276(6) Uani d . 1 C H21A -0.2029 0.0610 0.3243 0.033 Uiso calc R 1 H H21B -0.2618 -0.0429 0.2331 0.033 Uiso calc R 1 H C22 -0.20654(13) 0.1105(3) 0.19607(18) 0.0288(6) Uani d . 1 C H22A -0.2133 0.0477 0.1396 0.035 Uiso calc R 1 H H22B -0.2442 0.1938 0.1708 0.035 Uiso calc R 1 H N21 -0.13684(11) 0.1878(3) 0.24670(14) 0.0263(5) Uani d . 1 N C23 -0.09662(13) 0.1581(3) 0.21552(17) 0.0264(5) Uani d . 1 C H23 -0.1123 0.0847 0.1626 0.032 Uiso calc R 1 H C24 -0.02707(13) 0.2332(3) 0.25841(18) 0.0261(6) Uani d . 1 C H24 -0.0080 0.2965 0.3162 0.031 Uiso calc R 1 H N22 0.00786(11) 0.2137(3) 0.21805(14) 0.0285(5) Uani d . 1 N C25 0.07425(13) 0.3019(3) 0.25698(19) 0.0303(6) Uani d . 1 C H25A 0.0919 0.3377 0.3247 0.036 Uiso calc R 1 H H25B 0.0658 0.3990 0.2164 0.036 Uiso calc R 1 H C26 0.12973(13) 0.1964(3) 0.25705(19) 0.0303(6) Uani d . 1 C H26A 0.1095 0.1499 0.1908 0.036 Uiso calc R 1 H H26B 0.1710 0.2638 0.2720 0.036 Uiso calc R 1 H C31 -0.14148(13) -0.1902(3) 0.39677(18) 0.0299(6) Uani d . 1 C H31A -0.1293 -0.3063 0.4039 0.036 Uiso calc R 1 H H31B -0.1817 -0.1766 0.4059 0.036 Uiso calc R 1 H C32 -0.07803(14) -0.0960(4) 0.47519(19) 0.0314(6) Uani d . 1 C H32A -0.0873 0.0210 0.4624 0.038 Uiso calc R 1 H H32B -0.0706 -0.1194 0.5401 0.038 Uiso calc R 1 H N31 -0.01402(11) -0.1388(3) 0.47636(15) 0.0285(5) Uani d . 1 N C33 0.02213(14) -0.0239(3) 0.47292(18) 0.0271(6) Uani d . 1 C H33 0.0051 0.0836 0.4649 0.033 Uiso calc R 1 H C34 0.08981(13) -0.0550(3) 0.48121(17) 0.0278(6) Uani d . 1 C H34 0.1032 -0.1622 0.4775 0.033 Uiso calc R 1 H N32 0.13043(11) 0.0623(3) 0.49341(15) 0.0287(5) Uani d . 1 N C35 0.19836(13) 0.0260(3) 0.50396(19) 0.0312(6) Uani d . 1 C H35A 0.2013 -0.0909 0.4943 0.037 Uiso calc R 1 H H35B 0.2379 0.0545 0.5710 0.037 Uiso calc R 1 H C36 0.20545(13) 0.1203(3) 0.42927(19) 0.0312(6) Uani d . 1 C H36A 0.1976 0.2363 0.4347 0.037 Uiso calc R 1 H H36B 0.2543 0.1074 0.4435 0.037 Uiso calc R 1 H O1W 0.18836(10) -0.4032(3) 0.45043(16) 0.0421(5) Uani d . 1 O H1WA 0.1530(16) -0.360(4) 0.389(2) 0.040 Uiso d . 1 H H1WB 0.1722(16) -0.458(4) 0.472(2) 0.040 Uiso d . 1 H O2W -0.17484(11) -0.1825(3) 0.00214(14) 0.0396(5) Uani d . 1 O H2WA -0.1536(16) -0.207(4) 0.056(2) 0.040 Uiso d . 1 H H2WB -0.2134(18) -0.156(4) -0.010(2) 0.040 Uiso d . 1 H O3W 0.12500(12) 0.4050(3) 0.51967(18) 0.0449(5) Uani d . 1 O H3WA 0.1208(17) 0.307(4) 0.508(2) 0.040 Uiso d . 1 H H3WB 0.0879(17) 0.439(4) 0.520(2) 0.040 Uiso d . 1 H O4W -0.11569(12) 0.3656(3) 0.41687(16) 0.0438(5) Uani d . 1 O H4WA -0.1232(16) 0.313(4) 0.365(2) 0.040 Uiso d . 1 H H4WB -0.1360(17) 0.318(4) 0.438(2) 0.040 Uiso d . 1 H O5W 0.01454(12) -0.4807(3) 0.52799(18) 0.0495(6) Uani d . 1 O H5WA 0.0073(17) -0.386(4) 0.510(2) 0.040 Uiso d . 1 H H5WB -0.0224(18) -0.530(4) 0.501(2) 0.040 Uiso d . 1 H loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 N1 0.0245(10) 0.0248(11) 0.0243(10) -0.0009(9) 0.0125(9) 0.0010(9) C11 0.0229(13) 0.0290(14) 0.0316(13) -0.0082(11) 0.0129(11) -0.0028(11) C12 0.0288(13) 0.0248(13) 0.0332(14) -0.0046(12) 0.0143(11) -0.0021(11) N11 0.0271(12) 0.0277(12) 0.0260(11) 0.0034(10) 0.0127(9) -0.0006(9) C13 0.0278(13) 0.0217(13) 0.0254(12) 0.0005(11) 0.0122(11) 0.0007(11) C14 0.0307(14) 0.0268(14) 0.0243(12) 0.0022(11) 0.0139(11) 0.0030(11) N12 0.0271(12) 0.0227(11) 0.0278(11) -0.0021(9) 0.0134(10) -0.0020(9) C15 0.0319(15) 0.0347(15) 0.0337(15) 0.0032(12) 0.0214(13) 0.0014(12) C16 0.0263(13) 0.0302(15) 0.0412(15) 0.0010(11) 0.0224(12) 0.0055(12) N2 0.0237(10) 0.0271(12) 0.0292(11) -0.0012(9) 0.0133(9) 0.0032(9) C21 0.0252(13) 0.0288(14) 0.0315(13) -0.0019(11) 0.0170(11) 0.0006(11) C22 0.0241(13) 0.0315(14) 0.0286(13) 0.0003(11) 0.0127(11) 0.0039(11) N21 0.0289(11) 0.0244(11) 0.0263(10) -0.0016(9) 0.0155(9) 0.0027(9) C23 0.0293(13) 0.0223(13) 0.0226(12) -0.0002(11) 0.0106(11) 0.0002(10) C24 0.0293(13) 0.0197(13) 0.0235(12) -0.0025(11) 0.0105(11) -0.0009(10) N22 0.0257(11) 0.0297(12) 0.0283(11) -0.0009(10) 0.0133(10) 0.0007(10) C25 0.0274(13) 0.0257(14) 0.0341(14) -0.0033(11) 0.0141(12) 0.0005(12) C26 0.0294(14) 0.0305(15) 0.0343(14) -0.0018(12) 0.0193(12) 0.0061(12) C31 0.0290(13) 0.0332(14) 0.0324(14) -0.0001(12) 0.0198(12) 0.0062(12) C32 0.0326(14) 0.0369(16) 0.0285(13) 0.0035(12) 0.0190(12) 0.0013(12) N31 0.0280(11) 0.0303(12) 0.0255(10) -0.0011(10) 0.0133(9) -0.0009(10) C33 0.0309(13) 0.0264(14) 0.0207(12) 0.0026(12) 0.0116(11) -0.0002(11) C34 0.0303(14) 0.0265(14) 0.0217(12) 0.0023(12) 0.0108(11) 0.0000(11) N32 0.0311(12) 0.0271(12) 0.0270(11) 0.0009(10) 0.0151(10) 0.0023(9) C35 0.0237(13) 0.0309(14) 0.0301(14) 0.0001(12) 0.0087(11) 0.0015(12) C36 0.0237(13) 0.0288(14) 0.0377(14) -0.0054(11) 0.0144(12) -0.0005(12) O1W 0.0260(10) 0.0446(13) 0.0415(12) -0.0059(9) 0.0088(9) 0.0160(10) O2W 0.0285(10) 0.0626(14) 0.0290(9) 0.0067(10) 0.0163(9) 0.0051(10) O3W 0.0492(13) 0.0290(11) 0.0736(15) -0.0019(10) 0.0443(12) 0.0006(11) O4W 0.0609(14) 0.0376(12) 0.0462(12) -0.0191(10) 0.0376(11) -0.0118(10) O5W 0.0360(12) 0.0302(12) 0.0745(16) 0.0029(10) 0.0245(11) -0.0021(12) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle C21 N1 C11 112.51(19) C21 N1 C31 111.37(19) C11 N1 C31 112.5(2) C21 N1 N2 112.30(13) C11 N1 N2 102.43(13) C31 N1 N2 105.18(13) N1 C11 C12 112.1(2) N11 C12 C11 111.1(2) C13 N11 C12 118.2(2) N11 C13 C14 120.4(2) N12 C14 C13 120.5(2) C14 N12 C15 117.6(2) N12 C15 C16 109.9(2) N2 C16 C15 112.0(2) C16 N2 C26 112.1(2) C16 N2 C36 111.4(2) C26 N2 C36 112.3(2) C16 N2 N1 111.44(13) C26 N2 N1 101.04(12) C36 N2 N1 108.14(13) N1 C21 C22 112.4(2) N21 C22 C21 110.1(2) C23 N21 C22 117.4(2) N21 C23 C24 121.9(2) N22 C24 C23 119.5(2) C24 N22 C25 118.5(2) N22 C25 C26 110.5(2) N2 C26 C25 112.5(2) N1 C31 C32 111.8(2) N31 C32 C31 110.6(2) C33 N31 C32 117.2(2) N31 C33 C34 120.8(2) N32 C34 C33 119.5(2) C34 N32 C35 117.9(2) N32 C35 C36 110.3(2) N2 C36 C35 111.4(2) loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance N1 C21 1.460(3) N1 C11 1.461(3) N1 C31 1.464(3) N1 N2 7.029(3) C11 C12 1.520(4) C12 N11 1.454(3) N11 C13 1.271(3) C13 C14 1.464(4) C14 N12 1.264(3) N12 C15 1.460(3) C15 C16 1.517(4) C16 N2 1.468(3) N2 C26 1.468(3) N2 C36 1.469(3) C21 C22 1.525(4) C22 N21 1.460(3) N21 C23 1.268(3) C23 C24 1.456(4) C24 N22 1.268(3) N22 C25 1.457(3) C25 C26 1.515(4) C31 C32 1.514(4) C32 N31 1.462(3) N31 C33 1.269(3) C33 C34 1.465(4) C34 N32 1.271(3) N32 C35 1.462(3) C35 C36 1.517(4) loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_site_symmetry_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA _geom_hbond_publ_flag O1W H1WA N12 . 0.94(3) 1.97(3) 2.906(3) 175(3) y O1W H1WB O3W 1_545 0.78(3) 1.96(3) 2.736(3) 176(3) y O2W H2WA N11 . 0.76(3) 2.12(3) 2.883(3) 175(3) y O2W H2WB O1W 4_444 0.80(3) 1.99(3) 2.788(3) 176(3) y O3W H3WA N32 . 0.83(3) 2.07(3) 2.885(3) 170(3) y O3W H3WB O5W 1_565 0.88(3) 1.83(3) 2.711(3) 176(3) y O4W H4WA N21 . 0.87(3) 2.05(3) 2.928(3) 178(3) y O4W H4WB O2W 2 0.80(3) 2.01(3) 2.812(3) 173(3) y O5W H5WA N31 . 0.82(3) 2.11(4) 2.928(3) 174(3) y O5W H5WB O4W 1_545 0.80(3) 1.97(4) 2.771(3) 172(3) y loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion N11 C13 C14 N12 -171.8(2) N21 C23 C24 N22 -172.3(2) N31 C33 C34 N32 -168.7(2)