#------------------------------------------------------------------------------ #$Date: 2011-09-10 05:16:28 +0200 (Sat, 10 Sep 2011) $ #$Revision: 25271 $ #$URL: svn://www.crystallography.net/cod/cif/2/2006516.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2006516 loop_ _publ_author_name 'Jerzykiewicz, L. B.' 'Lis, T.' _publ_section_title ; Calcium D-3-Phosphoglycerate Tetrahydrate at 85K ; _journal_issue 9 _journal_name_full 'Acta Crystallographica Section C' _journal_page_first 1249 _journal_page_last 1251 _journal_volume 53 _journal_year 1997 _chemical_formula_moiety 'Ca 2+, (C3 H5 O7 P1) 2-, 4H2 O' _chemical_formula_sum 'C3 H13 Ca O11 P' _chemical_formula_weight 296.18 _chemical_name_systematic ; calcium D-3-phoshoglycerate tetrahydrate ; _space_group_IT_number 4 _symmetry_cell_setting monoclinic _symmetry_space_group_name_Hall 'P 2yb' _symmetry_space_group_name_H-M 'P 1 21 1' _cell_angle_alpha 90 _cell_angle_beta 102.76(3) _cell_angle_gamma 90 _cell_formula_units_Z 2 _cell_length_a 5.751(2) _cell_length_b 7.718(3) _cell_length_c 12.469(4) _cell_measurement_reflns_used 70 _cell_measurement_temperature 85(2) _cell_measurement_theta_max 13 _cell_measurement_theta_min 10 _cell_volume 539.8(3) _computing_cell_refinement 'Kuma KM4 Software' _computing_data_collection 'Kuma KM4 Software (Kuma Diffraction, 1989)' _computing_data_reduction 'Kuma KM4 Software' _computing_molecular_graphics 'ORTEPII (Johnson, 1976)' _computing_structure_refinement 'SHELXL93 (Sheldrick, 1993)' _computing_structure_solution 'SHELXS86 (Sheldrick, 1990)' _diffrn_ambient_temperature 85(2) _diffrn_measurement_device 'Kuma KM4 computer-controlled four-circle \w/2\q diffractometer' _diffrn_measurement_method \w/2\q _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71069 _diffrn_reflns_av_R_equivalents 0.0180 _diffrn_reflns_av_sigmaI/netI 0.0329 _diffrn_reflns_limit_h_max 8 _diffrn_reflns_limit_h_min 0 _diffrn_reflns_limit_k_max 11 _diffrn_reflns_limit_k_min 0 _diffrn_reflns_limit_l_max 18 _diffrn_reflns_limit_l_min -18 _diffrn_reflns_number 4382 _diffrn_reflns_theta_max 32.5 _diffrn_reflns_theta_min 3 _diffrn_standards_decay_% 2.3 _diffrn_standards_interval_count 100 _diffrn_standards_number 3 _exptl_absorpt_coefficient_mu 0.778 _exptl_absorpt_correction_type none _exptl_crystal_colour colourless _exptl_crystal_density_diffrn 1.822(2) _exptl_crystal_density_meas '1.808 at room temperature' _exptl_crystal_density_method 'flotation in C~2~H~5~I/CCl~4~ at room temperature' _exptl_crystal_description block _exptl_crystal_F_000 308 _exptl_crystal_size_max 0.2 _exptl_crystal_size_mid 0.1 _exptl_crystal_size_min 0.1 _refine_diff_density_max 0.43 _refine_diff_density_min -0.35 _refine_ls_abs_structure_details 'based on known stereochemistry at C(3)' _refine_ls_abs_structure_Flack '-0.03(2) (Flack, 1983)' _refine_ls_extinction_method none _refine_ls_goodness_of_fit_all 1.076 _refine_ls_goodness_of_fit_obs 1.078 _refine_ls_hydrogen_treatment refall _refine_ls_matrix_type full _refine_ls_number_parameters 196 _refine_ls_number_reflns 3910 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 1.076 _refine_ls_restrained_S_obs 1.078 _refine_ls_R_factor_all 0.0285 _refine_ls_R_factor_obs 0.0227 _refine_ls_shift/esd_max -0.283 _refine_ls_shift/esd_mean 0.013 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'w = 1/[\s^2^(Fo^2^)+(0.0304P)^2^] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_all 0.0567 _refine_ls_wR_factor_obs 0.0550 _reflns_number_observed 3674 _reflns_number_total 3910 _reflns_observed_criterion >2sigma(I) _[local]_cod_data_source_file mu1266.cif _[local]_cod_data_source_block I _cod_original_cell_volume 539.8(4) _cod_database_code 2006516 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, y+1/2, -z' loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 Ca 0.00483(8) 0.00562(9) 0.00649(9) 0.00059(8) 0.00141(6) 0.00010(8) P 0.00603(12) 0.00491(11) 0.00701(12) 0.00025(10) 0.00114(9) -0.00029(10) O(31) 0.0121(4) 0.0097(4) 0.0073(4) -0.0029(4) 0.0018(3) 0.0000(4) O(32) 0.0060(4) 0.0091(5) 0.0168(5) 0.0002(3) 0.0006(4) -0.0034(4) O(33) 0.0097(4) 0.0063(4) 0.0167(5) 0.0028(4) 0.0029(4) -0.0003(4) O(3) 0.0126(4) 0.0078(4) 0.0059(4) -0.0020(4) 0.0027(3) -0.0002(3) O(2) 0.0056(4) 0.0117(5) 0.0113(4) -0.0028(4) 0.0040(3) -0.0040(4) O(1) 0.0072(4) 0.0093(4) 0.0103(4) 0.0013(4) 0.0018(3) -0.0036(4) O(11) 0.0050(4) 0.0145(5) 0.0105(4) -0.0013(4) 0.0020(3) -0.0035(4) O(4) 0.0107(4) 0.0084(4) 0.0087(4) 0.0002(4) 0.0040(4) -0.0005(4) O(5) 0.0066(4) 0.0084(4) 0.0089(4) 0.0009(3) 0.0025(3) 0.0000(3) O(6) 0.0080(4) 0.0088(4) 0.0151(5) 0.0010(4) 0.0021(4) -0.0020(4) O(7) 0.0124(5) 0.0150(5) 0.0142(5) 0.0038(4) -0.0035(4) -0.0059(4) C(1) 0.0067(5) 0.0069(5) 0.0067(5) 0.0008(4) 0.0025(4) 0.0010(4) C(2) 0.0056(5) 0.0074(5) 0.0061(5) -0.0011(3) 0.0020(4) -0.0008(4) C(3) 0.0116(5) 0.0071(5) 0.0067(5) 0.0008(4) 0.0025(4) -0.0009(4) loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_thermal_displace_type _atom_site_calc_flag _atom_site_occupancy Ca 0.24959(4) 0.5 0.22274(2) 0.00562(5) Uani d 1 P 0.50170(5) 1.06060(5) 0.19242(2) 0.00603(6) Uani d 1 O(31) 0.42671(16) 0.99230(16) 0.07690(7) 0.0097(2) Uani d 1 O(32) 0.78241(16) 1.04494(14) 0.23198(8) 0.0109(2) Uani d 1 O(33) 0.42544(17) 1.23728(13) 0.21806(9) 0.0109(2) Uani d 1 O(3) 0.40082(17) 0.91625(12) 0.26249(7) 0.0087(2) Uani d 1 O(2) 0.24489(17) 0.66059(13) 0.39009(8) 0.0092(2) Uani d 1 O(11) 0.63600(16) 0.55679(15) 0.34483(8) 0.0090(2) Uani d 1 O(1) 0.86420(16) 0.73498(13) 0.46652(8) 0.0100(2) Uani d 1 O(4) 0.45310(17) 0.63459(13) 0.09718(8) 0.0090(2) Uani d 1 O(5) -0.01440(16) 0.33976(13) 0.32005(8) 0.0078(2) Uani d 1 O(6) -0.06097(17) 0.71108(14) 0.15874(8) 0.0107(2) Uani d 1 O(7) 0.00134(19) 0.38182(15) 0.05749(9) 0.0149(2) Uani d 1 C(1) 0.6660(3) 0.67847(16) 0.41396(9) 0.0066(2) Uani d 1 C(2) 0.4422(2) 0.76843(16) 0.43376(9) 0.0063(2) Uani d 1 C(3) 0.4210(3) 0.94490(17) 0.37819(10) 0.0084(2) Uani d 1 H(2) 0.460(4) 0.788(3) 0.5117(16) 0.003(4) Uiso d 1 H(3) 0.283(4) 1.001(4) 0.3910(18) 0.019(6) Uiso d 1 H(3') 0.568(4) 1.011(4) 0.4124(16) 0.010(5) Uiso d 1 H(20) 0.138(6) 0.693(4) 0.416(3) 0.035(8) Uiso d 1 H(32) 0.860(5) 1.137(4) 0.256(3) 0.022(6) Uiso d 1 H(4) 0.462(5) 0.587(4) 0.036(3) 0.032(8) Uiso d 1 H(41) 0.424(6) 0.745(5) 0.095(3) 0.042(9) Uiso d 1 H(5) 0.055(5) 0.326(4) 0.392(3) 0.026(7) Uiso d 1 H(51) -0.109(5) 0.416(4) 0.333(3) 0.028(7) Uiso d 1 H(6) -0.205(6) 0.680(5) 0.144(3) 0.040(8) Uiso d 1 H(61) -0.055(5) 0.796(4) 0.192(3) 0.022(6) Uiso d 1 H(7) -0.116(6) 0.421(5) 0.018(3) 0.043(9) Uiso d 1 H(71) 0.059(6) 0.310(5) 0.019(3) 0.037(8) Uiso d 1 loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' P P 0.1023 0.0942 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' Ca Ca 0.2262 0.3064 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle_site_symmetry_1 _geom_angle _geom_angle_publ_flag O(31) P O(32) . 109.20(10) yes O(31) P O(33) . 119.40(10) yes O(32) P O(33) . 109.30(10) yes O(31) P O(3) . 102.50(10) yes O(32) P O(3) . 104.10(10) yes O(33) P O(3) . 111.10(10) yes C(3) O(3) P . 118.80(10) yes O(3) C(3) C(2) . 107.50(10) yes O(2) C(2) C(3) . 112.00(10) yes C(3) C(2) C(1) . 108.60(10) yes O(2) C(2) C(1) . 107.60(10) yes O(1) C(1) C(2) . 117.1(2) yes O(11) C(1) C(2) . 117.1(2) yes O(11) C(1) O(1) . 125.8(2) yes C(2) O(2) Ca . 118.00(10) ? C(1) O(11) Ca . 121.90(10) ? O(33) Ca O(4) 1_545 94.90(10) ? O(33) Ca O(7) 1_545 79.80(10) ? O(4) Ca O(7) . 83.60(10) ? O(33) Ca O(6) 1_545 153.20(10) ? O(4) Ca O(6) . 85.60(10) ? O(7) Ca O(6) . 73.60(10) ? O(33) Ca O(2) 1_545 124.50(10) ? O(4) Ca O(2) . 116.10(10) ? O(7) Ca O(2) . 144.00(10) ? O(6) Ca O(2) . 78.00(10) ? O(33) Ca O(11) 1_545 80.10(10) ? O(4) Ca O(11) . 79.70(10) ? O(7) Ca O(11) . 152.50(10) ? O(6) Ca O(11) . 126.10(10) ? O(2) Ca O(11) . 63.50(10) ? O(33) Ca O(5) 1_545 83.80(10) ? O(4) Ca O(5) . 168.90(10) ? O(7) Ca O(5) . 85.30(10) ? O(6) Ca O(5) . 90.60(10) ? O(2) Ca O(5) . 73.10(10) ? O(11) Ca O(5) . 110.90(10) ? loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_site_symmetry_2 _geom_bond_distance _geom_bond_publ_flag P O(31) . 1.505(2) yes P O(32) . 1.585(2) yes P O(33) . 1.489(2) yes P O(3) . 1.6020(10) yes O(3) C(3) . 1.439(2) yes O(2) C(2) . 1.416(2) yes O(1) C(1) . 1.261(2) yes O(11) C(1) . 1.261(2) yes C(1) C(2) . 1.530(2) yes C(2) C(3) . 1.521(2) yes Ca O(2) . 2.432(2) yes Ca O(11) . 2.440(2) yes Ca O(33) 1_545 2.272(2) yes Ca O(4) . 2.389(2) yes Ca O(5) . 2.474(2) yes Ca O(6) . 2.419(2) yes Ca O(7) . 2.412(2) yes loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion _geom_torsion_publ_flag C(3) O(3) P O(31) -174.70(10) yes C(3) O(3) P O(32) 71.60(10) yes C(3) O(3) P O(33) -46.00(10) yes P O(3) C(3) C(2) -150.10(10) yes O(2) C(2) C(3) O(3) -58.0(2) yes O(11) C(1) C(2) O(2) 15.9(2) yes O(1) C(1) C(2) O(2) -165.5(2) yes O(1) C(1) C(2) C(3) 73.1(2) yes O(11) C(1) C(2) C(3) -105.5(2) yes C(1) C(2) C(3) O(3) 60.7(2) yes